Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g01287 ATGGAGTTCCGATCACGACACTTAATATCTCCCAAGGGGAGAGTTACTATCCAAAACTACTATCAGTTCCGGCATGTCGAGAATCCAGGTTGGAAGTTGGCGTGGACATGGACGAGGGGTGAAGTCATCTGGTCAATGAATGGAGCTTTTGCAACTGAACAGGGGAATTGCTCGTTGTTCAAGTTTGACATTCCACATTCCTGTGAGGAGAGACCTGTCATTCTTGATCTCATGCCGGAGGCATCACTGGGGAACAGGTCGGAGGGTTGTTGCCGCAGTGGGGTTCTTTCTGCTTGGGCTGTGGACCGTTCCAAGTCTTTCTCTTCGTTTGAAATCTCAGTGGGGAGCAAGGACGAAGATGGCAATGAGCTACCACCTGCCAATATTACTCTCATGGCGCCTGGTCCTGGTTACACTTGCAGCCCGTTTCTGGACTCTCATCCAACTGTTTCTTCTGTAATTGATGGCAAAAGAGAAGTTCAGATGAGTTGGCTCTCTTTTGGGGCATAG 510 49.22 MEFRSRHLISPKGRVTIQNYYQFRHVENPGWKLAWTWTRGEVIWSMNGAFATEQGNCSLFKFDIPHSCEERPVILDLMPEASLGNRSEGCCRSGVLSAWAVDRSKSFSSFEISVGSKDEDGNELPPANITLMAPGPGYTCSPFLDSHPTVSSVIDGKREVQMSWLSFGA 169
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16218110 16222224 + MELO3C029039.2.1 Cme01g01287 318263

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g01287 169 PANTHER PROTEIN COBRA 13 162 IPR006918 GO:0010215|GO:0031225
Cme01g01287 169 Pfam COBRA-like protein 14 162 IPR006918 GO:0010215|GO:0031225
Cme01g01287 169 PANTHER COBRA-LIKE PROTEIN 13 162 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g01287 - - - cpep:111776418 281.182
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01287 Cme-Chr1:16218110 Cme02g01813 Cme-Chr2:24898747 7.45E-43 dispersed
Cme01g01287 Cme-Chr1:16218110 Cme07g01006 Cme-Chr7:11262888 1.71E-42 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g91 . . Bda06g00512 . . . . Bma12g00957 . . . . . . . . . Bhi05g01752 . . . . . . . . . . . . . Cone12ag1205 Cone8ag1257 . Cone10ag1185 . . . Cme01g01287 . . Bda15g01047 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008827 2 4 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 0 1 1 0 2 1 1 1 1 1 2 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme01g01287 Cme_Chr01 FPKM 34.919735 36.338921 39.148987 36.085114 31.536058 36.818501 31.847736 31.954855 30.089218 32.29916