Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g01296 ATGGGTATTCGTCTGCCTGGTGTTGTTAATGCCAAAAAAATTCTCCATAGGATTCACAATTCAGATTCGATTCCAAAAGGTCACTTGGCTGTTTATGTTGGAGAAACACAGAGGAAGCGCTTTGTTGTACCTGTTTCTTACTTAAGTCATCCTTCTTTTAAGACATTGTTGAGTCAGGCTGAAGAGGAGTTTGGTTTCCATCATCCCATGGGAGGTCTCACAATTCCATGTAGAGAAGAAGCTTTCCTTAATCTCACTCAAAGTTTGAATGGCTCATGA 279 40.5 MGIRLPGVVNAKKILHRIHNSDSIPKGHLAVYVGETQRKRFVVPVSYLSHPSFKTLLSQAEEEFGFHHPMGGLTIPCREEAFLNLTQSLNGS 92
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16317414 16317986 - MELO3C013386.2.1 Cme01g01296 318272

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g01296 92 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY 1 90 - -
Cme01g01296 92 Pfam Auxin responsive protein 19 88 IPR003676 GO:0009733
Cme01g01296 92 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 1 90 IPR003676 GO:0009733
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g01296 K14488 SAUR; SAUR family protein - csv:101204067 184.111
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01296 Cme-Chr1:16317414 Cme11g00426 Cme-Chr11:4280768 8.00E-41 dispersed
Cme01g01295 Cme-Chr1:16281512 Cme01g01296 Cme-Chr1:16317414 4.62E-38 tandem
Cme01g01296 Cme-Chr1:16317414 Cme01g01297 Cme-Chr1:16322213 1.88E-31 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g80 . . . . . . . . . . . . . . . . . . . . . . . . Cla02g00464 Cam02g0470 Cec02g0470 . Clacu02g0473 Cmu02g0467 Cre02g0801 . . . . Lsi10g00455 . Chy11g00309 Cme01g01296 . . . . . . Bma03g00588 Bma08g00770 . Cmo02g00338 Cmo20g00780 . . . . . . . . . . . . . . . . . . . . Lsi11g01165 Csa02g01336 Chy01g00714 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000045 7 14 1 1 5 16 0 0 13 4 12 13 24 19 19 31 17 1 0 16 18 3 0 3 14 20 13 24 12 19 339
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme01g01296 Cme_Chr01 FPKM 12.953547 16.413904 41.715824 43.844906 48.546204 40.192822 48.73452 108.100067 107.65287 120.638832
Cme01g01296 Cme_Chr00 FPKM 0.164751 0.21562 1.229687 0.892963 1.65947 2.026062 1.107925 0.661718 0.430027 0.15268