Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g01299 ATGTGGCTTCAAAAAGGAAACAGTGTTAATAGCGCCAAAAAGGTCGGAGGAGCAGGCGGAGGGGGAAATGGGTTAGTTGCTATTGGTATAGACAGGGAAAAAGGAAGCCAAAATGCTCTCAGATGGGCAGCTGAACATTTGATTGGAAAGGGTCAAACTGTGATTTTAATCCATGTGGTTCATAGACCTTCTAGTGCAGCTGCTTCTTTGATTGGGGAAGCCATTATTTGTAATAGTGATGGCAATTTCACATCTGATTCCCCTCGTATACAGCAGCTCGAGTTGCAGACTAGAGACATTTTTCTTACCTTCCATTGCTATTGTACTCGGAAGGATATTCAATGTCTTGATATTATATTGGAAGACACCGATATAGTGAAAGCATTAACTGAATACGCATCGTACGCTGCAATCGAAACCTTGGTGCTCGGGGCTCCTTCGAAACATGGATTTATTAGGTTTAAGTCATCGAGCATGGGCAGTAGTGTGTCAAAGGGAGCACCGGATTTCTGCACTGTGTATGTCATCTCGAAGGGGAAGGTTTCATCGGTGAAGAATGCATCTCGGTCAGCTCCCTTCAGTTCCCCTCTACTAGACCATCTACAGAAGATATCTAAGCCGATCGTAAAGGGATCAATCACTCCTCGACATAAGTTCAATTCGAGAGATAGGACATCATTCAAGCCTCGCAGCTTTCAAGATGAAACAGTCAAGTCACCTTACTCTCATGGAGGAGAGAGAACTTCTATCTCGAAATTTAGTGGAGGTTTCTCTGAGTCAGAATCCGACATATCCTTTATAAGCTCTGGCAGACCAAGCACAGATCGTTCTTCTTCTGTTGCATTTGACTACTCTGATTCAGGTCCCCCACGATTTTCAACCAGCTCAGAGCATAGCTTTGCATCTCTACCATTTAAACCAAAGTGGACAGACCTCAGCAATCTCAACGATTTCTCATCAGTTTCAGATGAGAGCTGCAGGACATCATGTTCTTGGTCATCTCAGAACTTGGATGATGTAGAACTTGAAATGAGGAGGCTGAAGCTAGAGCTTAAACAAACTATGGAGATGTACAGTACAGCATGTAAAGAAGCACTAACAGCAAAGCAGAAGGCAATGGAACTAAATAATTGGAGACGTGAAGAAGAACAAAAACTAGAAGAGGCACGACTTGCACAAGAAGCAGCAATGGCTATTGCAGAGCAGGAGAGAGCTAGATGCAGAGCAGCGATGGAAGCAGCTGATGCAGCTAAGAGAATTGCTGAGTTAGAATCACATAAAAGGGCAACTCTAGAGATGAAAGCAGTTAAAGAGGCAGAGGAAATGCAGAAAGCATTGAAAAATCTTGCACAAAGCGACATCAGATACAGGAGATATTCAATTGAGGAGGTTGAATCGGCGACGGAACATTTTGCACAATCTCGGAAGATTGGGGAAGGAGGTTATGGACCTGTCTTTCGTTGTCGTCTTGATCACACATCGGTTGCAGTCAAGGTTTTGCGTCCTGACGCAACTCAAGGAAGGACACAGTTTCAGCAAGAGATTGATATACTGAGTTGCATAAGGCATCCCAACATGGTACTTCTTCTAGGAGCATGCCCTGAATATGGCATTCTAGTTTATGAGTACATGTCCAATGGAAGTTTGGAGGATCGACTCTTTCGAAAGGGTAACACCCCTGTTATTCCTTGGCAATTGAGATTTCGAATTGCTGCCGAGATTGCTACTGGCCTTCTGTTTCTCCACCAGACAAAGCCAGAGCCATTGGTGCATCGTGACCTTAAGCCAGCTAACATATTGCTGGACCACAACTATGTTTCCAAGATCAGTGACGTTGGTTTGGCTAGACTTTTACCTGCTGTGGCTGAAAATGTAACACAATGCTATGTGACTTCGGCCGCTGGAACTTTCTGCTATATAGACCCTGAGTATCAACAAACTGGAATGCTTGGGGTTAAATCTGACGTGTATTCACTAGGAATCATGTTGCTTCAACTAATTACAGCGAAGCCACCCATGGGGTTGGCTCACCATGTTGCTCGCGCTATCGAGAAGGGGACTTTTCAGGAGTTTCTGGACCCAGCTGTGGTTGATTGGCCAGTGGAACAAACACTTTGCTTTGCAAAATTAGCACTTCAATGTGCAGAACTTCGGAGAAAGGACCGACCAGATCTTGCCACTGTCGTGTTGCCCGAACTTGAAAAATTGAGAGAATTTGGTGAAGAGAAGATGGAGCACATGGTGTCAAGGGATAGTAGTGGATTGATAAGCAGTTTTAGCCATGCCTCAACGGAGCAGGACGTAATGAGCGACCCACAGCTAATGATGATTTCAGAAAGCTCCAAGAGCCCGTCTAGTGTATCATCACAGTAG 2373 44.58 MWLQKGNSVNSAKKVGGAGGGGNGLVAIGIDREKGSQNALRWAAEHLIGKGQTVILIHVVHRPSSAAASLIGEAIICNSDGNFTSDSPRIQQLELQTRDIFLTFHCYCTRKDIQCLDIILEDTDIVKALTEYASYAAIETLVLGAPSKHGFIRFKSSSMGSSVSKGAPDFCTVYVISKGKVSSVKNASRSAPFSSPLLDHLQKISKPIVKGSITPRHKFNSRDRTSFKPRSFQDETVKSPYSHGGERTSISKFSGGFSESESDISFISSGRPSTDRSSSVAFDYSDSGPPRFSTSSEHSFASLPFKPKWTDLSNLNDFSSVSDESCRTSCSWSSQNLDDVELEMRRLKLELKQTMEMYSTACKEALTAKQKAMELNNWRREEEQKLEEARLAQEAAMAIAEQERARCRAAMEAADAAKRIAELESHKRATLEMKAVKEAEEMQKALKNLAQSDIRYRRYSIEEVESATEHFAQSRKIGEGGYGPVFRCRLDHTSVAVKVLRPDATQGRTQFQQEIDILSCIRHPNMVLLLGACPEYGILVYEYMSNGSLEDRLFRKGNTPVIPWQLRFRIAAEIATGLLFLHQTKPEPLVHRDLKPANILLDHNYVSKISDVGLARLLPAVAENVTQCYVTSAAGTFCYIDPEYQQTGMLGVKSDVYSLGIMLLQLITAKPPMGLAHHVARAIEKGTFQEFLDPAVVDWPVEQTLCFAKLALQCAELRRKDRPDLATVVLPELEKLREFGEEKMEHMVSRDSSGLISSFSHASTEQDVMSDPQLMMISESSKSPSSVSSQ 790
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16365037 16371100 + MELO3C013389.2.1 Cme01g01299 318275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g01299 790 Pfam Protein kinase domain 472 725 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme01g01299 790 SMART serkin_6 471 733 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme01g01299 790 PANTHER OS02G0152300 PROTEIN 22 773 - -
Cme01g01299 790 SUPERFAMILY Protein kinase-like (PK-like) 453 729 IPR011009 -
Cme01g01299 790 ProSiteProfiles Protein kinase domain profile. 471 733 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme01g01299 790 PANTHER BNAA05G18880D PROTEIN 22 773 - -
Cme01g01299 790 ProSitePatterns Serine/Threonine protein kinases active-site signature. 589 601 IPR008271 GO:0004672|GO:0006468
Cme01g01299 790 MobiDBLite consensus disorder prediction 232 288 - -
Cme01g01299 790 Coils Coil 432 452 - -
Cme01g01299 790 MobiDBLite consensus disorder prediction 761 790 - -
Cme01g01299 790 Gene3D HUPs 25 176 IPR014729 -
Cme01g01299 790 CDD STK_N 25 179 - -
Cme01g01299 790 Gene3D Transferase(Phosphotransferase) domain 1 544 756 - -
Cme01g01299 790 Coils Coil 337 357 - -
Cme01g01299 790 Pfam Universal stress protein family 28 168 IPR006016 -
Cme01g01299 790 Gene3D Phosphorylase Kinase; domain 1 437 543 - -
Cme01g01299 790 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 27 176 - -
Cme01g01299 790 MobiDBLite consensus disorder prediction 213 288 - -
Cme01g01299 790 MobiDBLite consensus disorder prediction 216 231 - -
Cme01g01299 790 Coils Coil 375 403 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01299 Cme-Chr1:16365037 Cme03g01705 Cme-Chr3:25699444 0 dispersed
Cme01g01299 Cme-Chr1:16365037 Cme04g00320 Cme-Chr4:2501637 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64611 PF00069 Pkinase 5.30E-41 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g01299 - - csv:101202855 1362.82