Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g01309 AAGCAACAAGAGCCTTTCCATATTCAAAGTCTCAAAAAAATTTCACAAGTTTGTTTTTGCTTTCAGTGTCCCATATTTAGAATCTATTACAACATGGGTTTCCGCTTGCCTAGAATTGTTACTGCTAAGCAAAGTCTTCAGCGATCTTCATCAACAGGAAATGGAGCATCTCCAAAAGCTATTGATGTCCCTAAGGGCTACTTTGCAGTTTATATTGGTGAGGAACAAAAGAAGCGTTTTGTCATACCACTATCTTACTTGAACCAGCCTTCTTTTCAAGATTTGTTGAGTCAAGCAGAAGAGAAATTTGGATACAATCATCCAATGGGTGGCATTACAATTCCTTGCAGTGAAGACTATTTCCTGGATGTTACCGAGAGGTTGAATGACTCATGA 396 38.38 KQQEPFHIQSLKKISQVCFCFQCPIFRIYYNMGFRLPRIVTAKQSLQRSSSTGNGASPKAIDVPKGYFAVYIGEEQKKRFVIPLSYLNQPSFQDLLSQAEEKFGYNHPMGGITIPCSEDYFLDVTERLNDS 131
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16405300 16406463 + MELO3C013399.2.1 Cme01g01309 318285

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g01309 131 Pfam Auxin responsive protein 45 127 IPR003676 GO:0009733
Cme01g01309 131 PANTHER - 41 127 - -
Cme01g01309 131 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 41 127 IPR003676 GO:0009733
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g01309 K14488 SAUR; SAUR family protein - csv:105436057 193.356
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme01g01309 Cme11g00436 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01301 Cme-Chr1:16375131 Cme01g01309 Cme-Chr1:16405300 8.40E-50 dispersed
Cme01g01304 Cme-Chr1:16383429 Cme01g01309 Cme-Chr1:16405300 5.61E-63 dispersed
Cme01g01305 Cme-Chr1:16383432 Cme01g01309 Cme-Chr1:16405300 5.50E-61 dispersed
Cme01g01309 Cme-Chr1:16405300 Cme11g00446 Cme-Chr11:4341722 6.12E-40 dispersed
Cme01g01312 Cme-Chr1:16423186 Cme01g01309 Cme-Chr1:16405300 1.29E-34 dispersed
Cme01g01308 Cme-Chr1:16399728 Cme01g01309 Cme-Chr1:16405300 8.42E-34 tandem
Cme01g01309 Cme-Chr1:16405300 Cme01g01310 Cme-Chr1:16408469 5.79E-60 tandem
Cme01g01309 Cme-Chr1:16405300 Cme11g00436 Cme-Chr11:4306376 8.23E-38 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g70 . . . . . . . . . . . Cma20g00786 . . Sed05g2270 . . Bhi05g01766 Tan02g0734 Cmetu01g0016 . . . . Cla02g00469 Cam02g0476 Cec02g0477 . Clacu02g0480 Cmu02g0475 Cre02g0807 . . . . Lsi10g00441 . . Cme01g01309 . Blo13g00529 . Bda14g00592 . . . . Sed01g0246 . Cmo20g00805 . . . . . Cpe05g01302 Bhi10g01918 Tan05g1219 Cmetu11g1650 . . . . . . . . . . . Lsi11g01159 Csa02g01325 . Cme11g00436
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000134 9 7 1 5 4 10 0 0 10 1 8 11 13 9 11 13 10 2 1 9 8 8 0 6 7 10 7 21 6 6 213
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme01g01309 Cme_Chr01 FPKM 2.395121 2.706799 5.65254 5.489542 4.826387 4.917003 4.778689 5.580066 7.0502 7.161352