Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g01318 ATGGGTGATACTGAAGATGTTAACACTGAGAACATGCGAAATCATCTTCAATGTTCATATGGAGTATCGTCTTCTTCAGCTGGAAATCTTCCTTTCTCGATGGATCAACTTAAAATTTCCCAAATGAACTCTTCACAAATCCGTCCACCGCACTTTCATTCAAATTTTCTTGGGGATAATAGTAGAAGGATTGGGATACCTCCTAGTCCCAACTCACCGCAGATCCCACCAATTTCACCGTATTCTCAGATCCCGATCTCGCGTCCGATGAATCAGCAAAATTATAACCCAGTACCTACTCATTCTCGGTCGTTGTCTCAGCCTTCTTTTTTCTCTCTTGATTCTTTGCCCCCTTTAAGCCCATCTCCATTTCGTGAATCCCCAACTACGTCGAATTCAGATCAGGTTTCTGCAGATACATCAATGGAGGATAGGGATAATAATAGTTCACATTCTTTGTTGCCCCCCTCACCTTATATGAGAGTCAATTCTTCTAAGATGGGAGATTCTTTACCTCCTCGTAAAGCTCATAGGCGGTCTAATAGTGATATTCCATTTGGATTATCTTCAATGATTCAGCCATCTCCTCTTCTCCCATTCAATAGCTCTGGTGGATTGGAACGATCAACAAGTAGTAAAGAGAATGCTGGCTTATTAAAGCCCGGTAGCCAGTTTGTTAAAAGAGAACCTAGTTTGGAGAAAAGCGTTGACAACAATTTAGAAGGAATGGGTGAGAGGAAATCCGATGGGGACAGTGTGGACGACTTATTTTCTGCTTATATGAATTTGGATCATATTGATTTGTTCAACTCTTCTGGGACTAACGACAAGAATGGTCATGAGAATCGAGAGGATTTGGATAGTAGGGGTAGTGGAACAAAGACAAATGGTGGTGAGAGCAGTGATAATGAAGCAGAAAGCAGTGTAAATGAAAGCGGGGATAGTGCTCAAATGCCTGGATTGAATTCGTCTGCTGAGAAGAGGGAAGGGATCAAACGGACCGCAGGGGGAGATATTGCTCCGACTACCAGACATTATCGAAGTGTCTCCATGGATAGTTTCATGGGCAAGTTGCAGTTTGGTGATGAGTCCCCCAAAATGCCTCCTACACCACCTGGCGTTCGTCCAGGACAACTTTCTTCAAACAACTTAGTTGATGGTAATTCTGCTCCATTCAGCTTGGAGTTTGGTAATGGTGAGTTCAGTGGGGCTGAATTGAAGAAAATTATGGCAAATGACAAACTTGCCGAGATTGCTTTGACTGATCCCAAGCGTGCGAAGAGGATCTTGGCAAACCGTCAATCTGCTGCTCGATCAAAAGAACGTAAGATGCGGTATATATCTGAGTTGGAACACAAGGTTCAGACTCTTCAGACAGAAGCTACCACACTGTCTGCCCAACTCACACTTTTGCAGAGAGATTCAGTTGGACTTACGAACCAGAATAATGAACTGAAGTTTCGTCTCCAAGCCATGGAACAACAAGCACAACTACGGGATGCTCTTAACGAAGCCTTAACTGCGGAGGTTCAGAGATTGAAACTCGCTACGACTGAGCTAAACGCTCAGTCTCATCCCTCTAATGGGGTAATGTCCCAACCTGCCATCAATCACCATAGCCTCCAGCTTCAACTTCAGCATCACCAACAACAGCAACAGATGCAACAGAATGGAAGTACAACCACAAAACCTGAATCCAACCAATAA 1707 43.7 MGDTEDVNTENMRNHLQCSYGVSSSSAGNLPFSMDQLKISQMNSSQIRPPHFHSNFLGDNSRRIGIPPSPNSPQIPPISPYSQIPISRPMNQQNYNPVPTHSRSLSQPSFFSLDSLPPLSPSPFRESPTTSNSDQVSADTSMEDRDNNSSHSLLPPSPYMRVNSSKMGDSLPPRKAHRRSNSDIPFGLSSMIQPSPLLPFNSSGGLERSTSSKENAGLLKPGSQFVKREPSLEKSVDNNLEGMGERKSDGDSVDDLFSAYMNLDHIDLFNSSGTNDKNGHENREDLDSRGSGTKTNGGESSDNEAESSVNESGDSAQMPGLNSSAEKREGIKRTAGGDIAPTTRHYRSVSMDSFMGKLQFGDESPKMPPTPPGVRPGQLSSNNLVDGNSAPFSLEFGNGEFSGAELKKIMANDKLAEIALTDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVQRLKLATTELNAQSHPSNGVMSQPAINHHSLQLQLQHHQQQQQMQQNGSTTTKPESNQ 568
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16531644 16535553 - MELO3C013407.2.1 Cme01g01318 318294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g01318 568 Coils Coil 440 495 - -
Cme01g01318 568 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 77 566 - -
Cme01g01318 568 SUPERFAMILY Leucine zipper domain 424 475 IPR046347 GO:0003700|GO:0006355
Cme01g01318 568 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 422 485 IPR004827 GO:0003700|GO:0006355
Cme01g01318 568 MobiDBLite consensus disorder prediction 69 83 - -
Cme01g01318 568 MobiDBLite consensus disorder prediction 358 386 - -
Cme01g01318 568 MobiDBLite consensus disorder prediction 42 252 - -
Cme01g01318 568 SMART brlzneu 420 484 IPR004827 GO:0003700|GO:0006355
Cme01g01318 568 MobiDBLite consensus disorder prediction 270 345 - -
Cme01g01318 568 MobiDBLite consensus disorder prediction 84 116 - -
Cme01g01318 568 MobiDBLite consensus disorder prediction 543 568 - -
Cme01g01318 568 PANTHER ZIPPER TRANSCRIPTION FACTOR FAMILY PROTEIN, PUTATIVE ISOFORM 1-RELATED 77 566 - -
Cme01g01318 568 MobiDBLite consensus disorder prediction 291 322 - -
Cme01g01318 568 Pfam bZIP transcription factor 424 478 IPR004827 GO:0003700|GO:0006355
Cme01g01318 568 Gene3D - 423 475 - -
Cme01g01318 568 MobiDBLite consensus disorder prediction 183 218 - -
Cme01g01318 568 Coils Coil 503 523 - -
Cme01g01318 568 MobiDBLite consensus disorder prediction 230 252 - -
Cme01g01318 568 CDD bZIP_plant_RF2 425 474 IPR044759 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01318 Cme-Chr1:16531644 Cme06g00865 Cme-Chr6:5925532 1.65E-51 dispersed
Cme04g02135 Cme-Chr4:28647043 Cme01g01318 Cme-Chr1:16531644 3.54E-07 dispersed
Cme01g01318 Cme-Chr1:16531644 Cme01g01319 Cme-Chr1:16542908 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40747 PF00170 bZIP_1 7.50E-09 CL0018 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g01318 - - csv:101216189 974.541