Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme01g01318 | ATGGGTGATACTGAAGATGTTAACACTGAGAACATGCGAAATCATCTTCAATGTTCATATGGAGTATCGTCTTCTTCAGCTGGAAATCTTCCTTTCTCGATGGATCAACTTAAAATTTCCCAAATGAACTCTTCACAAATCCGTCCACCGCACTTTCATTCAAATTTTCTTGGGGATAATAGTAGAAGGATTGGGATACCTCCTAGTCCCAACTCACCGCAGATCCCACCAATTTCACCGTATTCTCAGATCCCGATCTCGCGTCCGATGAATCAGCAAAATTATAACCCAGTACCTACTCATTCTCGGTCGTTGTCTCAGCCTTCTTTTTTCTCTCTTGATTCTTTGCCCCCTTTAAGCCCATCTCCATTTCGTGAATCCCCAACTACGTCGAATTCAGATCAGGTTTCTGCAGATACATCAATGGAGGATAGGGATAATAATAGTTCACATTCTTTGTTGCCCCCCTCACCTTATATGAGAGTCAATTCTTCTAAGATGGGAGATTCTTTACCTCCTCGTAAAGCTCATAGGCGGTCTAATAGTGATATTCCATTTGGATTATCTTCAATGATTCAGCCATCTCCTCTTCTCCCATTCAATAGCTCTGGTGGATTGGAACGATCAACAAGTAGTAAAGAGAATGCTGGCTTATTAAAGCCCGGTAGCCAGTTTGTTAAAAGAGAACCTAGTTTGGAGAAAAGCGTTGACAACAATTTAGAAGGAATGGGTGAGAGGAAATCCGATGGGGACAGTGTGGACGACTTATTTTCTGCTTATATGAATTTGGATCATATTGATTTGTTCAACTCTTCTGGGACTAACGACAAGAATGGTCATGAGAATCGAGAGGATTTGGATAGTAGGGGTAGTGGAACAAAGACAAATGGTGGTGAGAGCAGTGATAATGAAGCAGAAAGCAGTGTAAATGAAAGCGGGGATAGTGCTCAAATGCCTGGATTGAATTCGTCTGCTGAGAAGAGGGAAGGGATCAAACGGACCGCAGGGGGAGATATTGCTCCGACTACCAGACATTATCGAAGTGTCTCCATGGATAGTTTCATGGGCAAGTTGCAGTTTGGTGATGAGTCCCCCAAAATGCCTCCTACACCACCTGGCGTTCGTCCAGGACAACTTTCTTCAAACAACTTAGTTGATGGTAATTCTGCTCCATTCAGCTTGGAGTTTGGTAATGGTGAGTTCAGTGGGGCTGAATTGAAGAAAATTATGGCAAATGACAAACTTGCCGAGATTGCTTTGACTGATCCCAAGCGTGCGAAGAGGATCTTGGCAAACCGTCAATCTGCTGCTCGATCAAAAGAACGTAAGATGCGGTATATATCTGAGTTGGAACACAAGGTTCAGACTCTTCAGACAGAAGCTACCACACTGTCTGCCCAACTCACACTTTTGCAGAGAGATTCAGTTGGACTTACGAACCAGAATAATGAACTGAAGTTTCGTCTCCAAGCCATGGAACAACAAGCACAACTACGGGATGCTCTTAACGAAGCCTTAACTGCGGAGGTTCAGAGATTGAAACTCGCTACGACTGAGCTAAACGCTCAGTCTCATCCCTCTAATGGGGTAATGTCCCAACCTGCCATCAATCACCATAGCCTCCAGCTTCAACTTCAGCATCACCAACAACAGCAACAGATGCAACAGAATGGAAGTACAACCACAAAACCTGAATCCAACCAATAA | 1707 | 43.7 | MGDTEDVNTENMRNHLQCSYGVSSSSAGNLPFSMDQLKISQMNSSQIRPPHFHSNFLGDNSRRIGIPPSPNSPQIPPISPYSQIPISRPMNQQNYNPVPTHSRSLSQPSFFSLDSLPPLSPSPFRESPTTSNSDQVSADTSMEDRDNNSSHSLLPPSPYMRVNSSKMGDSLPPRKAHRRSNSDIPFGLSSMIQPSPLLPFNSSGGLERSTSSKENAGLLKPGSQFVKREPSLEKSVDNNLEGMGERKSDGDSVDDLFSAYMNLDHIDLFNSSGTNDKNGHENREDLDSRGSGTKTNGGESSDNEAESSVNESGDSAQMPGLNSSAEKREGIKRTAGGDIAPTTRHYRSVSMDSFMGKLQFGDESPKMPPTPPGVRPGQLSSNNLVDGNSAPFSLEFGNGEFSGAELKKIMANDKLAEIALTDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVQRLKLATTELNAQSHPSNGVMSQPAINHHSLQLQLQHHQQQQQMQQNGSTTTKPESNQ | 568 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 16531644 | 16535553 | - | MELO3C013407.2.1 | Cme01g01318 | 318294 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme01g01318 | 568 | Coils | Coil | 440 | 495 | - | - | |
Cme01g01318 | 568 | PANTHER | TRANSCRIPTION FACTOR POSF21-RELATED | 77 | 566 | - | - | |
Cme01g01318 | 568 | SUPERFAMILY | Leucine zipper domain | 424 | 475 | IPR046347 | GO:0003700|GO:0006355 | |
Cme01g01318 | 568 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 422 | 485 | IPR004827 | GO:0003700|GO:0006355 | |
Cme01g01318 | 568 | MobiDBLite | consensus disorder prediction | 69 | 83 | - | - | |
Cme01g01318 | 568 | MobiDBLite | consensus disorder prediction | 358 | 386 | - | - | |
Cme01g01318 | 568 | MobiDBLite | consensus disorder prediction | 42 | 252 | - | - | |
Cme01g01318 | 568 | SMART | brlzneu | 420 | 484 | IPR004827 | GO:0003700|GO:0006355 | |
Cme01g01318 | 568 | MobiDBLite | consensus disorder prediction | 270 | 345 | - | - | |
Cme01g01318 | 568 | MobiDBLite | consensus disorder prediction | 84 | 116 | - | - | |
Cme01g01318 | 568 | MobiDBLite | consensus disorder prediction | 543 | 568 | - | - | |
Cme01g01318 | 568 | PANTHER | ZIPPER TRANSCRIPTION FACTOR FAMILY PROTEIN, PUTATIVE ISOFORM 1-RELATED | 77 | 566 | - | - | |
Cme01g01318 | 568 | MobiDBLite | consensus disorder prediction | 291 | 322 | - | - | |
Cme01g01318 | 568 | Pfam | bZIP transcription factor | 424 | 478 | IPR004827 | GO:0003700|GO:0006355 | |
Cme01g01318 | 568 | Gene3D | - | 423 | 475 | - | - | |
Cme01g01318 | 568 | MobiDBLite | consensus disorder prediction | 183 | 218 | - | - | |
Cme01g01318 | 568 | Coils | Coil | 503 | 523 | - | - | |
Cme01g01318 | 568 | MobiDBLite | consensus disorder prediction | 230 | 252 | - | - | |
Cme01g01318 | 568 | CDD | bZIP_plant_RF2 | 425 | 474 | IPR044759 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme01g01318 | Cme-Chr1:16531644 | Cme06g00865 | Cme-Chr6:5925532 | 1.65E-51 | dispersed | |
Cme04g02135 | Cme-Chr4:28647043 | Cme01g01318 | Cme-Chr1:16531644 | 3.54E-07 | dispersed | |
Cme01g01318 | Cme-Chr1:16531644 | Cme01g01319 | Cme-Chr1:16542908 | 0 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
40747 | PF00170 | bZIP_1 | 7.50E-09 | CL0018 | Cme | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme01g01318 | - | - | csv:101216189 | 974.541 |