Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme01g01319 | ATGGGTGATACTGAAGATGCTCGTACTGATAACTTACGAAATCTTCAATGTTCGTTTGGAACATCTTCATCTTCTGCTTTAAAGTATCATTTCTCTATGGATCAACTTAAAATTTCTCAAATGACCTGCTCTCAAGGCCGTCCACAGCATTTCCAGTCGAATTTTCTTGGGGATAATAATAGACGAATTGGGATACCTCCTTGTCCTAACTCGCCGCAGGTCCCACCAATCTCACCGTATTCTCAGATCCCTGTATCCCGTCCGATGAACCAACAGAGTTATAACTCAGTTCCTACTCATTCTCGATCGTTATCTCAGCCTTCTTTTTTCTCTCTCGATTCTTTGCCCCCTTTAAGTCCGGCCCCATTTCGTGACTCCCCATCTACGTCGAATTCAGATCAGGTTTCTGCCGATACGTCAATGGAGGATAGGGATGCCAGTTCTCATTCTTTGTTGCCTCCTTCACCTTATACGAGGGCCAATTCTTCGAAGATGGGTGATGCTTTACCTCCTCGTAAAGCCCATAGGCGGTCTAACAGTGATATTCCATTTGGATTATCTTCGATGATTCAGTCACCTCCTGTTCTCCCTTTTAGTGGCTCAGGTGGATTGGAGCGATCAACAAGTAGCAAAGAGAATGCGGGAATATTTAAGCAAGCCAGCCAGTTTGTTAAAAGGGAACCTAGTTTGGAGAAAAGCATTGATAACCATTTGGAAGGAATGGGTGAAAAGAAGTCTGAAGGGGACACTGTGGATGATTTGTTCTCTGCTTATATGAATTTGGATAATATTGATTTGTTCAACTCCTCAGGGACTAACGACAAGAATGGTCATGAGAATCGGGAGGATTTGGATAGTAGAGGCAGTGGCACAAAGACAGGGGGTGAGAGCAGTGATAATGAAGCAGAAAGCAGTGTTAACGAAAGTGGGGATAACTCTCAAATGCCTGGATTGAATTCGTCTGCCGAGAAGAGGGAAGGAATTAAACGGACTGCTGGGGGAGATATTGCTCCAAATAACAGACATTACCGGAGTATCTCTATGGATAGCTTCATGGGCAAGTTGCAGTTTGGTGATGAGTCACCCAAAATGCCTCCTACACCACCCGGCATTCGTCCGGGGCAACTTTCTTCAAACAACCTAGCTGACGGTAATTCAACTCCATTCAGCTTGGAATTTGGTAATGGTGAGTTCAGTGGGGCTGAACTGAAGAAAATTATGGCAAATGACAAACTAGCTGAGATTGCACTAACTGATCCTAAACGTGCAAAGAGGATCTTGGCAAACCGTCAATCTGCTGCTCGATCAAAAGAACGAAAAATGCGGTATATATCTGAGTTGGAACACAAGGTTCAGACGCTTCAGACAGAAGCTACCACGCTGTCTGCCCAACTCACACTTCTGCAGCGAGACTCAGTTGGACTTACAAACCAGAATAATGAGCTGAAGTTCCGTCTCCAAGCCATGGAACAGCAAGCACAACTGCGGGATGCTCTAAATGAAGCGTTAACTGCTGAGGTTCAGAGATTGAAACTTGCTACAACCGATATAAACGCACAATCTCATCCCTCAAATGGGGTAATGGCTCAATCTTCTATGAACCGCCATGGACTCCAGCTTCAGCAGCAGCACCAACAACAGCAACATATGCAGCAGAATGGGAGTGCAACCACAAAACCAGAATCCAACCAATAA | 1695 | 44.84 | MGDTEDARTDNLRNLQCSFGTSSSSALKYHFSMDQLKISQMTCSQGRPQHFQSNFLGDNNRRIGIPPCPNSPQVPPISPYSQIPVSRPMNQQSYNSVPTHSRSLSQPSFFSLDSLPPLSPAPFRDSPSTSNSDQVSADTSMEDRDASSHSLLPPSPYTRANSSKMGDALPPRKAHRRSNSDIPFGLSSMIQSPPVLPFSGSGGLERSTSSKENAGIFKQASQFVKREPSLEKSIDNHLEGMGEKKSEGDTVDDLFSAYMNLDNIDLFNSSGTNDKNGHENREDLDSRGSGTKTGGESSDNEAESSVNESGDNSQMPGLNSSAEKREGIKRTAGGDIAPNNRHYRSISMDSFMGKLQFGDESPKMPPTPPGIRPGQLSSNNLADGNSTPFSLEFGNGEFSGAELKKIMANDKLAEIALTDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVQRLKLATTDINAQSHPSNGVMAQSSMNRHGLQLQQQHQQQQHMQQNGSATTKPESNQ | 564 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 16542908 | 16547543 | - | MELO3C013408.2.1 | Cme01g01319 | 318295 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme01g01319 | 564 | MobiDBLite | consensus disorder prediction | 83 | 113 | - | - | |
Cme01g01319 | 564 | CDD | bZIP_plant_RF2 | 422 | 471 | IPR044759 | GO:0003700|GO:0006355 | |
Cme01g01319 | 564 | PANTHER | ZIPPER TRANSCRIPTION FACTOR FAMILY PROTEIN, PUTATIVE ISOFORM 1-RELATED | 76 | 555 | - | - | |
Cme01g01319 | 564 | MobiDBLite | consensus disorder prediction | 275 | 289 | - | - | |
Cme01g01319 | 564 | MobiDBLite | consensus disorder prediction | 268 | 342 | - | - | |
Cme01g01319 | 564 | MobiDBLite | consensus disorder prediction | 518 | 564 | - | - | |
Cme01g01319 | 564 | Pfam | bZIP transcription factor | 421 | 475 | IPR004827 | GO:0003700|GO:0006355 | |
Cme01g01319 | 564 | Gene3D | - | 420 | 472 | - | - | |
Cme01g01319 | 564 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 419 | 482 | IPR004827 | GO:0003700|GO:0006355 | |
Cme01g01319 | 564 | MobiDBLite | consensus disorder prediction | 57 | 212 | - | - | |
Cme01g01319 | 564 | MobiDBLite | consensus disorder prediction | 68 | 82 | - | - | |
Cme01g01319 | 564 | SUPERFAMILY | Leucine zipper domain | 421 | 472 | IPR046347 | GO:0003700|GO:0006355 | |
Cme01g01319 | 564 | MobiDBLite | consensus disorder prediction | 290 | 320 | - | - | |
Cme01g01319 | 564 | MobiDBLite | consensus disorder prediction | 355 | 388 | - | - | |
Cme01g01319 | 564 | SMART | brlzneu | 417 | 481 | IPR004827 | GO:0003700|GO:0006355 | |
Cme01g01319 | 564 | MobiDBLite | consensus disorder prediction | 373 | 388 | - | - | |
Cme01g01319 | 564 | Coils | Coil | 437 | 492 | - | - | |
Cme01g01319 | 564 | MobiDBLite | consensus disorder prediction | 181 | 195 | - | - | |
Cme01g01319 | 564 | PANTHER | TRANSCRIPTION FACTOR POSF21-RELATED | 76 | 555 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme01g01319 | Cme-Chr1:16542908 | Cme03g00331 | Cme-Chr3:4324576 | 3.91E-51 | dispersed | |
Cme01g01318 | Cme-Chr1:16531644 | Cme01g01319 | Cme-Chr1:16542908 | 0 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
40748 | PF00170 | bZIP_1 | 8.70E-09 | CL0018 | Cme | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme01g01319 | - | - | csv:101215703 | 1037.71 |