Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g01319 ATGGGTGATACTGAAGATGCTCGTACTGATAACTTACGAAATCTTCAATGTTCGTTTGGAACATCTTCATCTTCTGCTTTAAAGTATCATTTCTCTATGGATCAACTTAAAATTTCTCAAATGACCTGCTCTCAAGGCCGTCCACAGCATTTCCAGTCGAATTTTCTTGGGGATAATAATAGACGAATTGGGATACCTCCTTGTCCTAACTCGCCGCAGGTCCCACCAATCTCACCGTATTCTCAGATCCCTGTATCCCGTCCGATGAACCAACAGAGTTATAACTCAGTTCCTACTCATTCTCGATCGTTATCTCAGCCTTCTTTTTTCTCTCTCGATTCTTTGCCCCCTTTAAGTCCGGCCCCATTTCGTGACTCCCCATCTACGTCGAATTCAGATCAGGTTTCTGCCGATACGTCAATGGAGGATAGGGATGCCAGTTCTCATTCTTTGTTGCCTCCTTCACCTTATACGAGGGCCAATTCTTCGAAGATGGGTGATGCTTTACCTCCTCGTAAAGCCCATAGGCGGTCTAACAGTGATATTCCATTTGGATTATCTTCGATGATTCAGTCACCTCCTGTTCTCCCTTTTAGTGGCTCAGGTGGATTGGAGCGATCAACAAGTAGCAAAGAGAATGCGGGAATATTTAAGCAAGCCAGCCAGTTTGTTAAAAGGGAACCTAGTTTGGAGAAAAGCATTGATAACCATTTGGAAGGAATGGGTGAAAAGAAGTCTGAAGGGGACACTGTGGATGATTTGTTCTCTGCTTATATGAATTTGGATAATATTGATTTGTTCAACTCCTCAGGGACTAACGACAAGAATGGTCATGAGAATCGGGAGGATTTGGATAGTAGAGGCAGTGGCACAAAGACAGGGGGTGAGAGCAGTGATAATGAAGCAGAAAGCAGTGTTAACGAAAGTGGGGATAACTCTCAAATGCCTGGATTGAATTCGTCTGCCGAGAAGAGGGAAGGAATTAAACGGACTGCTGGGGGAGATATTGCTCCAAATAACAGACATTACCGGAGTATCTCTATGGATAGCTTCATGGGCAAGTTGCAGTTTGGTGATGAGTCACCCAAAATGCCTCCTACACCACCCGGCATTCGTCCGGGGCAACTTTCTTCAAACAACCTAGCTGACGGTAATTCAACTCCATTCAGCTTGGAATTTGGTAATGGTGAGTTCAGTGGGGCTGAACTGAAGAAAATTATGGCAAATGACAAACTAGCTGAGATTGCACTAACTGATCCTAAACGTGCAAAGAGGATCTTGGCAAACCGTCAATCTGCTGCTCGATCAAAAGAACGAAAAATGCGGTATATATCTGAGTTGGAACACAAGGTTCAGACGCTTCAGACAGAAGCTACCACGCTGTCTGCCCAACTCACACTTCTGCAGCGAGACTCAGTTGGACTTACAAACCAGAATAATGAGCTGAAGTTCCGTCTCCAAGCCATGGAACAGCAAGCACAACTGCGGGATGCTCTAAATGAAGCGTTAACTGCTGAGGTTCAGAGATTGAAACTTGCTACAACCGATATAAACGCACAATCTCATCCCTCAAATGGGGTAATGGCTCAATCTTCTATGAACCGCCATGGACTCCAGCTTCAGCAGCAGCACCAACAACAGCAACATATGCAGCAGAATGGGAGTGCAACCACAAAACCAGAATCCAACCAATAA 1695 44.84 MGDTEDARTDNLRNLQCSFGTSSSSALKYHFSMDQLKISQMTCSQGRPQHFQSNFLGDNNRRIGIPPCPNSPQVPPISPYSQIPVSRPMNQQSYNSVPTHSRSLSQPSFFSLDSLPPLSPAPFRDSPSTSNSDQVSADTSMEDRDASSHSLLPPSPYTRANSSKMGDALPPRKAHRRSNSDIPFGLSSMIQSPPVLPFSGSGGLERSTSSKENAGIFKQASQFVKREPSLEKSIDNHLEGMGEKKSEGDTVDDLFSAYMNLDNIDLFNSSGTNDKNGHENREDLDSRGSGTKTGGESSDNEAESSVNESGDNSQMPGLNSSAEKREGIKRTAGGDIAPNNRHYRSISMDSFMGKLQFGDESPKMPPTPPGIRPGQLSSNNLADGNSTPFSLEFGNGEFSGAELKKIMANDKLAEIALTDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVQRLKLATTDINAQSHPSNGVMAQSSMNRHGLQLQQQHQQQQHMQQNGSATTKPESNQ 564
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16542908 16547543 - MELO3C013408.2.1 Cme01g01319 318295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g01319 564 MobiDBLite consensus disorder prediction 83 113 - -
Cme01g01319 564 CDD bZIP_plant_RF2 422 471 IPR044759 GO:0003700|GO:0006355
Cme01g01319 564 PANTHER ZIPPER TRANSCRIPTION FACTOR FAMILY PROTEIN, PUTATIVE ISOFORM 1-RELATED 76 555 - -
Cme01g01319 564 MobiDBLite consensus disorder prediction 275 289 - -
Cme01g01319 564 MobiDBLite consensus disorder prediction 268 342 - -
Cme01g01319 564 MobiDBLite consensus disorder prediction 518 564 - -
Cme01g01319 564 Pfam bZIP transcription factor 421 475 IPR004827 GO:0003700|GO:0006355
Cme01g01319 564 Gene3D - 420 472 - -
Cme01g01319 564 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 419 482 IPR004827 GO:0003700|GO:0006355
Cme01g01319 564 MobiDBLite consensus disorder prediction 57 212 - -
Cme01g01319 564 MobiDBLite consensus disorder prediction 68 82 - -
Cme01g01319 564 SUPERFAMILY Leucine zipper domain 421 472 IPR046347 GO:0003700|GO:0006355
Cme01g01319 564 MobiDBLite consensus disorder prediction 290 320 - -
Cme01g01319 564 MobiDBLite consensus disorder prediction 355 388 - -
Cme01g01319 564 SMART brlzneu 417 481 IPR004827 GO:0003700|GO:0006355
Cme01g01319 564 MobiDBLite consensus disorder prediction 373 388 - -
Cme01g01319 564 Coils Coil 437 492 - -
Cme01g01319 564 MobiDBLite consensus disorder prediction 181 195 - -
Cme01g01319 564 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 76 555 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01319 Cme-Chr1:16542908 Cme03g00331 Cme-Chr3:4324576 3.91E-51 dispersed
Cme01g01318 Cme-Chr1:16531644 Cme01g01319 Cme-Chr1:16542908 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40748 PF00170 bZIP_1 8.70E-09 CL0018 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g01319 - - csv:101215703 1037.71