Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g01338 ATGGGGGCGGTTGGAGAAGAGTTGATGAAGTTGGAGAAAATGCAGGGGATAAATGCTCGCGAAGAGAAAATTCTTGTTTTAGTAAGGTTGAGGCCCTTGAACGAGAAGGAGATTATGATGAATGAAGCAGCAGATTGGGAGTGCATCAATGACACTAGTATCTTGTATCGGAATACCTTACGGGAGGGGTCCACATTTCCAAGTGCCTATACTTTTGATAGAGTATTTCGAGGTGATTGCTCTACAAGGCAGGTGTACGAGGAAGGAGCCCGAGAAATTGCATTTTCTGTAGTCAGTGGAATCAACTCAAGTATTTTTGCATATGGTCAGACAAGCAGTGGAAAGACATACACCATGAATGGAATTCTTGAATATTCAGTAGCAGATATATTTGATTACATTAGAAGGCATGAAGAAAGAGCATTCATTGTGAAGTTTTCAGCTATTGAGATATACAATGAAGCTGTTAGAGACCTCCTGAGCACAGATACTAGTCCTCTGAGGCTGCTAGATGACCAGGAGCGAGGGACTATTGTGGAGAAAGTCACTGAGGAAACTTTGAGGGACTGGAACCATTTAAGGGAGCTCATTTCAATTTGTGAAGCTCAACGACGGATTGGAGAGACCTCACTGAATGAGAAAAGCTCTAGATCTCATCAAATTATTAAACTAACAATTGAAAGTTCTGCTCGCGAGTTTTTAGGAAAAGACAATTCAACCACACTTGCTGCTAGTGTGAGTTTTATTGATTTAGCTGGGAGTGAACGTGCAGCTCAAGCATTGTCAGCAGGGGCAAGACTGAAAGAAGGATGTCACATAAATCGCAGTTTACTGACTCTGGGTACTGTCATTCGAAAACTGAGCAAAGGAAGAAATGGTCATATCAACTACAGAGATTCTAAGCTGACACGAATATTGCAGCCCTGCTTAGGTGGCAATGCTAGAACAGCCATCATCTGCACATTGAGCCCTGCAAGAAGTCATGTTGAACAAACTAGAAACACTCTCTTGTTCGCTTGTTGTGCAAAAGAGGTGACAACAAAAGCACAAGTCAATGTGGTCATGTCTGATAAGGCTTTGGTTAAGCATTTGCAGAAAGAGTTAGCGAGATTGGAGAGTGAGTTGAGAACTCCTGCCCCTGTTTCGTCCAGTTCCGAATATGCAGCCCTACTTAAAAAGAAAGATCTTCAAATTGAGAAGATGGCGAAGGAGATTAGAGAACTCACTAAGCAGAGGGATCTTGCTCAATCCCGGGTTGAAGATTTACTTCGTATGGTTGGAAATGATGATGTCTCAGGAAAGGATATCAAAACTAGTTATTCTAAATTGCAAGCAAGGGATGGTTTAGAGTATGAAGGTTCACCATCAGAAACTTCAAGTGTGGCTGATTTTCGTGGTAGAGATATTGGTGGAAAATCTTTTAACAATCCTCAGTATTATGACGGAGACAGTGATGATGGAAAGAGGTTCCTTGACTCTCAGTCGGGTCAAAGTGGAACAACAACCGCTCTTGCAATGGCAGAAGACTCCGATGACTGCAAGGAAGTTCAATGTATTGAAATGGGGGAGTCAGTCAGGGACAATGGCTTGTCACCGCTTGCTATTAATAATGGTGAATTTAGAGGAATCCCCTTTACCGTGTCAAACGATGGAAATATTGGTCATGGATTGATATCAACGCCTGTGTCTGGCAACAGAGAAGCACATCAGATTCAAAATAATTCAACAAATGGTCAACCAGAGCAAGGACTCCATGAAGTAAGGAGGACGAATGTTCATTCTACGAGTAGTCCTTACAGCAATGATGCATGTTCAAAGGTTACTGCAGACGTGTCCAGCTCCAGAAGCTTGCAGCTGCCCAGAAGCTGGAGTTGTAGAACTAATTTCCCGACTGAGTTATCACCTGATAGAGGAGAGGCAACCCCTCCTCATGCATTTGACAAAAGCTTTCCTGGAAGACCTGAAGGTCTTGGACGGAAACTCCCACAATTAGACTTCACAGGCGGCCTCGTGAGACTTGATTCTCAATCCTCTATAGGGAGTGCTCGGAGCACCAAGACCTCTGCAGATGAAGACATTACTCGCTTGGATGCCTTTGTTGCTGGATTGAAGAAAATGACAAACTCAGAGTATGGGAAAGAACTTCCCGAGGGTCAGGTTCTGGAGGATGGACAAGGATTGGATTTCTTAAAGAACACAAATTATGTTGGAGGTGAGGCATTGCAGAATGGGTTAGTCACATCGGATTGGAAGGAAGAATTTCAGAGGCAGCAGAGGATGATAATTGAGCTTTGGCAAACTTGCAACGTCTCAATTGTCCACAGAACTTACTTTTTCTTGCTCTTCCAAGGTGATCCTGCTGATTCCATTTACATGGAAGTAGAACTTAGGAGACTGACTTTTCTAAAGCAAACATTTTATTACGGCAATTCAGCTATGGATGATGGCCGGAAAGTCTCCTTTTCTTCAAGTACAAGGGATCTTCGTCGGGAGAGAGAAACATTGAGCAAGCTAATGCAGAAGCGATTCTCAGAAGATGAAAGAAAGAGATTGTTTCAGAAATGGGGAATTTCATTGAATTCAAAACGCCGAAGGCTGCAGCTGATCAGTCAGTTGTGGAGTGATCCGAAGAACATGAATCATGTAACTGAGAGTGCAGCCATTGTTGCAAAGATTGTGAAATTTGCTGAGCAAGGACAAGCCCTCAAGGGGAATTTTGGTCTCAGCTTCATTACACCTCCACAGAAAAGTAGATCATTTAGCTGGAGAAACAATAGGACTTCTCTTCTCTGA 2793 42.96 MGAVGEELMKLEKMQGINAREEKILVLVRLRPLNEKEIMMNEAADWECINDTSILYRNTLREGSTFPSAYTFDRVFRGDCSTRQVYEEGAREIAFSVVSGINSSIFAYGQTSSGKTYTMNGILEYSVADIFDYIRRHEERAFIVKFSAIEIYNEAVRDLLSTDTSPLRLLDDQERGTIVEKVTEETLRDWNHLRELISICEAQRRIGETSLNEKSSRSHQIIKLTIESSAREFLGKDNSTTLAASVSFIDLAGSERAAQALSAGARLKEGCHINRSLLTLGTVIRKLSKGRNGHINYRDSKLTRILQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVNVVMSDKALVKHLQKELARLESELRTPAPVSSSSEYAALLKKKDLQIEKMAKEIRELTKQRDLAQSRVEDLLRMVGNDDVSGKDIKTSYSKLQARDGLEYEGSPSETSSVADFRGRDIGGKSFNNPQYYDGDSDDGKRFLDSQSGQSGTTTALAMAEDSDDCKEVQCIEMGESVRDNGLSPLAINNGEFRGIPFTVSNDGNIGHGLISTPVSGNREAHQIQNNSTNGQPEQGLHEVRRTNVHSTSSPYSNDACSKVTADVSSSRSLQLPRSWSCRTNFPTELSPDRGEATPPHAFDKSFPGRPEGLGRKLPQLDFTGGLVRLDSQSSIGSARSTKTSADEDITRLDAFVAGLKKMTNSEYGKELPEGQVLEDGQGLDFLKNTNYVGGEALQNGLVTSDWKEEFQRQQRMIIELWQTCNVSIVHRTYFFLLFQGDPADSIYMEVELRRLTFLKQTFYYGNSAMDDGRKVSFSSSTRDLRRERETLSKLMQKRFSEDERKRLFQKWGISLNSKRRRLQLISQLWSDPKNMNHVTESAAIVAKIVKFAEQGQALKGNFGLSFITPPQKSRSFSWRNNRTSLL 930
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16769128 16777591 - MELO3C013420.2.1 Cme01g01338 318314

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g01338 930 MobiDBLite consensus disorder prediction 491 505 - -
Cme01g01338 930 Pfam Kinesin motor domain 29 345 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cme01g01338 930 MobiDBLite consensus disorder prediction 447 508 - -
Cme01g01338 930 Gene3D Kinesin motor domain 15 376 IPR036961 -
Cme01g01338 930 PRINTS Kinesin heavy chain signature 100 121 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cme01g01338 930 PRINTS Kinesin heavy chain signature 209 226 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cme01g01338 930 PRINTS Kinesin heavy chain signature 245 263 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cme01g01338 930 PRINTS Kinesin heavy chain signature 295 316 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cme01g01338 930 Pfam Domain of unknown function (DUF3490) 753 912 IPR021881 -
Cme01g01338 930 PANTHER CENTROMERE PROTEIN E 8 930 - -
Cme01g01338 930 Coils Coil 354 374 - -
Cme01g01338 930 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 23 377 IPR027417 -
Cme01g01338 930 SMART kinesin_4 21 353 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cme01g01338 930 ProSitePatterns Kinesin motor domain signature. 244 255 IPR019821 GO:0003777|GO:0005524|GO:0007018
Cme01g01338 930 PANTHER KINESIN-LIKE PROTEIN KIN-7F 8 930 - -
Cme01g01338 930 CDD KISc_CENP_E 23 345 - -
Cme01g01338 930 Coils Coil 391 425 - -
Cme01g01338 930 ProSiteProfiles Kinesin motor domain profile. 23 345 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cme01g01338 930 MobiDBLite consensus disorder prediction 625 655 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g01338 K11498 CENPE; centromeric protein E - csv:101213783 1748.41
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01338 Cme-Chr1:16769128 Cme03g02122 Cme-Chr3:28438833 5.20E-84 dispersed
Cme07g01645 Cme-Chr7:22161113 Cme01g01338 Cme-Chr1:16769128 0 transposed
Cme10g01649 Cme-Chr10:22396215 Cme01g01338 Cme-Chr1:16769128 4.22E-47 transposed
Cme12g01857 Cme-Chr12:24843747 Cme01g01338 Cme-Chr1:16769128 1.93E-43 transposed
Cme01g01338 Cme-Chr1:16769128 Cme03g01903 Cme-Chr3:27157282 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g46 Blo02g00649 . . Bda08g00962 . Bpe12g00095 . . Cmo19g00704 . . . . . . Cpe04g00100 Cpe15g00563 Bhi05g01255 . . . . . . Cla02g00484 Cam02g0492 Cec02g0493 Cco02g0498 Clacu02g0496 Cmu02g0491 Cre02g0824 Cone12ag1189 Cone8ag1236 . Cone10ag1095 . Csa07g00039 . Cme01g01338 Blo04g00541 Blo13g00533 Bda15g01063 Bda14g00581 Bpe15g00840 Bpe05g00313 Bma03g00574 . . . . . Cma19g00692 . Car19g00536 . . . . . . . . . . . . . . . . Lsi11g01139 . Chy01g00742 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004297 2 1 3 1 3 1 2 1 1 1 1 1 3 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme01g01338 Cme_Chr01 FPKM 76.044296 84.517433 17.351591 16.140017 4.759667 6.172654 6.536299 7.203485 8.070142 8.481702