Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g01347 ATGGAAGCCGAAGAAGATGATTCTTCATATCACGACCAAAAATCTTCTTCTTTAGATGTTAAGTGTGACACCAATCGAGAAGAGCTTCATAGCAATGAACAACAGCATTGTGCGTCCAAGTCCTCAATTATCGAAACGGAGTTTTCACCTAATACCGTCGTGGAATCTTTACCACCAAGAGATGCAATTCTTGGGGATGAGATTCTTGCTGTGGATACTTGTTCGGAGATGGAGAAGAAGGATTTGGTGGAGGAGAAAGAGATAAAAGAGGAGAAAGATTCTCGTAACATTATTCAAGATATGGCGGAAGATTCAGTGAAGTTGGAGATTGAACCTGATATTGAGAAAACGGGGTTATCGGAGCAAAGGGCTTTCGATGATGTGAAAGAGAATACAGGGGTGACAGAGGAGGAGAAGGCTTTGAGTGAATTTGCTCAAGGTGAGTTGTTACCGGAAATGGTTTTTGTTGGTGTTGCTGAAAATCAGGCCGAGGGCAATGTTTTAATGGCGAATTTTTCAGAGCATACGGTCGTAGACGGTTCAGCTGGCTGTGTAGAGACAACCGAGACGACGTGTCTGAGTGATGTTTTGGCTGAGGAAACGCTTGCAGAAACGACTCTTTTTGTGCAGGATGTAGATGTTACTGATGCAATCAATTTAGTGCAGAAGACAAAGGTGGAAGAGCACGCTGATGACGCCAATGATTCGAAGGATACAGAGGTACCAAAACAAGAAAATTTTTCTGTGGAGAAGATGGAATTAGGCGTCCGGGTGCAGTTGGAAGAGAACTCTGAGTTGAAAGGTAGTTTGGTAGATGGGGCTGTGGAGGGACGGACAGAAAATTTAGCAGACAGGCCTGGTGAAACGTTGAAGAGGGAGAATGCCTCAAGCACTACTAATGAGGTGGGGCTGACACATATTGCTGTGGAGATTAAGGAGACGGTAAATGTAGGAAATGCTGAAGACAAGACTATTGAGATGGATGGAATGTGTATGGAAGACAAGGCTACTGCTGTGGGGATGATGGAGAATTTGACAGATGAGACCCCAGAGATCAAGGGAGTGGATGTAGCAGATTACAGCATTGAAGAGTTGAAGATCGAAGACATGGAGGATAGGGAAGCGGGGGTGCAAGGATTGGGTTTGGCCGATAAGAGCCCCGTGGTTGAGAAGCTCGAGAATGTGGCAGATGAGAATGCAGAGGCTGAGGGAGTGCAAGTGACTGACTACACCGCGGAAGAAGTAAAATCGGAGAATGTAGAAGATGACAAGACTGCACAAGGGGAGGAAATAGCTATGGCAGAAGAGATTGCGGAGCCAGATGACATGGTTTATTTGGTGGATGAAGGGATTGGATCAGAGGAGACGGATGTAAACATGACATATTTGGTGGAGGAAACGGAAGCAGCAGAGGAGGTTGAGGAGATGGATGTTACAGAAGAGATGGATGAGCCAAATATAAGTAGCAGTGGGTCTAAAAGGAAGCGTGGAAAGAATTCTAAAGCTCCAGCTAGAGTGGCTTCCAGGAAGAAGGTGGAAGAGGACGTTTGCTTTATTTGTTTTGATGGGGGTGATCTTGTACTCTGTGATCGCAGAGGTTGTCCCAAGGCATACCACCCGGCCTGTATTAATCGTGATGAGGCATTCTTCCGAGCCAAGGGTCGATGGAACTGTGGTTGGCATCTCTGTAGTAACTGTGAGAAGACTGCCCATTACATGTGTTACACATGTACTTTTTCCTTGTGCAAGGGCTGCATAAAAAATGCGGTTATTTTTTGTGTTAGAGGGAATAAAGGCTTCTGCGAGACATGCATGAGATTTGTTACATCGATTGAAAAGAATGAGCAGGGGAGTACAGAAAAGGGCCAAATCGATTTTAATGACAAAAATAGCTGGGAATATCTTTTCAAGGAGTACTGGATAGATCTGAAGGGAAGCCTTTCTCTAACATTTGATGAACTTGTTCACGCTAAAAACCCATGGAAAGGATCTGAGACACTAACTAGCAGGCCTGATTCACCGGGTGAGCTATGTGATGGTAATGTTGATGGAGGATCAGATTTGGATGTTTCTGAAAATGAAGAATCTGGTAGTTCTAAAAAGAGAAAAGCTAAGAAAAGGTCAAGATCTCAAGCAAAGGAAATGAGTTCGCCTAGTATGCCAGCTATAGCTGATTCTCAAGGGCTATCCGCGGATGACAATGTTGAGTGGGCATCTAAAGAGCTCTTGGAGTTTGTAATGCACATGAAGAATGGTGATAGAACTGTTTTATCTCAGTTTGACGTGCAGGCTCTCTTATTAGAATATATTAAAAGAAATAAGCTTCGTGATCCTCGACGGAAAAGTCAGATCATATGTGATTCAAGACTTGAGAGTTTGTTTGGAAAGCCACGTGTGGGACATTTTGAAATGTTGAAGCTCCTCGAATCACACTTCCTCATCAAAGAGGATGCCCAGATAAATGATCTGCATGGGAGTGTTGCTGAAACTGAATCAAGTCAGTTGGAGGCTGATGGGACTGATGGGTCAGGCAAGATTAAGAAAGAGAAAAAACGCAGGACGAGGAAAAAAGATGAGAGAGGATTGCAGTCTAACCTTGATGACTATGCAGCTATTGATATTCATAACATTAATTTAATTTACTTAAAACGTAACTTGGTGGAATATCTGATCGAAGATGAGGAGAGTTTTCATGACAAGGTTGTTGGTTCTTTTGTGAGGATAAGAATATCAGGCAGTGCACAAAAACAAGATTTATATCGGCTGGTTCAAGTTGTAGGTACAAGTAAAGCATCCGAGCCTTATAAAGTTGGTAAAAGGATGACTGATATCTTGTTAGAGATTTTGAATTTGAACAAGACAGAAGTGGTTTCAATTGATATTATCTCAAATCAAGAGTTCACAGAGGATGAGTGCAAGCGTCTCAGACAGAGCATGAAGTGTGGAATCATTAACCGTCTGACAGTGGGTGAACTCCAGGAGAGAGCCATGTCGCTTCAAGATGCCAGAGTCAAGGATTGGATGGAGACCGAGATAGTTCGACTAAGTCATCTTCGTGATCGAGCGAGTGAGAAAGGGCGCCGAAAAGAGCTTAGAGAATGTGTTGAGAAACTACAGCTTTTGAAGACACCTGAGGAGCGGCAGCGCAGAATTGAGGAAATACCAGAAATACATGCAGACCCAAATATGGATCCGAGTCATGAATCTGAAGATGAAGATGAAGCAGATGATAAGAGACGAGAAACCTACACCTTGTCAAGAAGCACAAGCTTTGGCAGGAGAACGAGGGAGCCAGTTTCTCCTGGAAAAGGAGGTTCACATTTGAATGACTCCTGGAGCGGGACTAGAAACTTCTCTAACACGAATCGAGACATGAGCAGGAACTTGTCTGGCAAAGGCTTCTCTAACCAAGGGGATGATGCTATTGGTTCCGGTGAAATAATAAATGAAACTTCATGGGGTCATGGAAGAGAGAGAGATGTTAAAAAAACAAGCAAGTGGGACAAACAAGTTTCGCCTAGTTCAGAAATGACTGCTAGGAATGCCTTGTCTGGGGCTGCATCTGAGTCTTCTGCTGCTCACTCGGTAAATCCGACAGTATCTTCATCTGTGGGGACTACACAGAATGCAGCTACAGCAAATGAATCTGAGAAGATATGGCATTATCAGGATCCTTCTGGGAAAGTGCAGGGACCGTTTTCAATGGTGCAACTGCGCAAGTGGAGTAACACAGGTTATTTTCCTACAGACTTGAGAATATGGAGAATCTCAGACCAGCAAGAGGACTCCCTACTCTTGACCGATGTCTTAGCGGGAAAGATCTCGAAGGACACTCCATTGACAAGTAACAGTTTGCAAGTACACCCGAATTCTTCTCCATTTGTGGGGAGGCCTCAGGGAGGCACTTTGCAGTCAGGTGTGGATGGACAGAATGCTAGTAGTTCAAATTCACATACTAATCCAACTTCTTATGATCAATCTTCTGGAGGAAGATGGAAATCTCAAAATGAAGTTAGCCCTACTGGTAGACCTGTCTCGGGTTCTATAAAAGTCCCCAGATATTCAGGAGAAAGATGGTCTTCTGACCATGGCAATAAGAACTTCACTAATCTTCCTTCTCCTACTCCCAGCTCAGGAGGAACAAAGGAGCAGCCATTTCAAGTGGCTGCATCGTTCATGGAGGCGAAATCACTCTCGGGAACTGGTGGTGGTGGTTTGCATGGTTCTTCAGTTATGCAAGGGTCTGAAAATGACCCACTGCGTTCACATTTGGGTCGGAATTCGTCAGAAAAGGGCATGGGTTCAGGTCCTATAAATGCACTCCAAAATCATCAATCTCAGCCGGTAAGGCAATCACCTATCATTGACGATGCTTCGCTCAATCCAGCTGCAGATATTAGAAGCATTAGTGCAAATCTTCAGAGTTTGGTACAATCCATCAACAGTCGTAATCCTCCTATTGAAGCTCATGGACGTGGGTCTGGCTCCATCCTGAAACGCGAAACAGATACTTCGGAGGCATGGCAAAATGCACAATCTCACAAAGTTGAATCAAACGTTTCTTCTAGCATGCCACCAGCACAAACCCTTCACAGTCGTTGGGGGGAGATGTCACCTGCACAAAATGCTGCTGTCACATCGTTTAGTGCAGGAAGTTCAACATCAAGTTTTTCCTCAGCCGGTTTGTCCAATTTTCCGTCTTCTGACCCTTGGCGATCTACGGCTCCTATTTCTAATAACCCACAACACATTCAGTGTTCAACTCCACCCAATCTAGCTTGGGGAATGGGTGCTCCAGAAGGTCAAAGTACTGTTCCACGACCAGGTTCGGAATCTCAGAACCAAACTTGGGGGCCTATGCCATCAGGAAATCCAAACATGGGTTGGGGTCCAACAGCACCACCTCCAAATGCTAGTGCTATGATGTGGGGAACCACTGCTCAAAGTTCTGGTCCTGCAGCTACAAACCCGGGTTGGATTGCACCAGGTCAAGGGCCGGCAGCTGGAAACAACATTCAAGGGTGGCCAGCGCACAGCCCTATGCCACCTCCGGTAAATGCAACTCCGGGATGGGTTGGTTCCAACGTTGCACCAATGCCACCTATGAATATGAATCCCAGTTGGCTCGTTCCATCTGTGAATCAGAACATGTGGGGTAATGAGCATGGCAAAAATGGGAATAGATTCTCGAACCAAAAGGATGGTGGTTCTCATGGTGGAGATCCCGGGAATGGAGATAAATCTTGGGGTATGCAACCATCTTTTGGTGGTGGGAATTCTAGGTCTCCTTACAATAGAGTGCAAAAACTGTGCAAATATCATGAAAGTGGACATTGCAAAAAAGGAGGTACTTGTGATTACAGGCACAAGTAG 5373 44.82 MEAEEDDSSYHDQKSSSLDVKCDTNREELHSNEQQHCASKSSIIETEFSPNTVVESLPPRDAILGDEILAVDTCSEMEKKDLVEEKEIKEEKDSRNIIQDMAEDSVKLEIEPDIEKTGLSEQRAFDDVKENTGVTEEEKALSEFAQGELLPEMVFVGVAENQAEGNVLMANFSEHTVVDGSAGCVETTETTCLSDVLAEETLAETTLFVQDVDVTDAINLVQKTKVEEHADDANDSKDTEVPKQENFSVEKMELGVRVQLEENSELKGSLVDGAVEGRTENLADRPGETLKRENASSTTNEVGLTHIAVEIKETVNVGNAEDKTIEMDGMCMEDKATAVGMMENLTDETPEIKGVDVADYSIEELKIEDMEDREAGVQGLGLADKSPVVEKLENVADENAEAEGVQVTDYTAEEVKSENVEDDKTAQGEEIAMAEEIAEPDDMVYLVDEGIGSEETDVNMTYLVEETEAAEEVEEMDVTEEMDEPNISSSGSKRKRGKNSKAPARVASRKKVEEDVCFICFDGGDLVLCDRRGCPKAYHPACINRDEAFFRAKGRWNCGWHLCSNCEKTAHYMCYTCTFSLCKGCIKNAVIFCVRGNKGFCETCMRFVTSIEKNEQGSTEKGQIDFNDKNSWEYLFKEYWIDLKGSLSLTFDELVHAKNPWKGSETLTSRPDSPGELCDGNVDGGSDLDVSENEESGSSKKRKAKKRSRSQAKEMSSPSMPAIADSQGLSADDNVEWASKELLEFVMHMKNGDRTVLSQFDVQALLLEYIKRNKLRDPRRKSQIICDSRLESLFGKPRVGHFEMLKLLESHFLIKEDAQINDLHGSVAETESSQLEADGTDGSGKIKKEKKRRTRKKDERGLQSNLDDYAAIDIHNINLIYLKRNLVEYLIEDEESFHDKVVGSFVRIRISGSAQKQDLYRLVQVVGTSKASEPYKVGKRMTDILLEILNLNKTEVVSIDIISNQEFTEDECKRLRQSMKCGIINRLTVGELQERAMSLQDARVKDWMETEIVRLSHLRDRASEKGRRKELRECVEKLQLLKTPEERQRRIEEIPEIHADPNMDPSHESEDEDEADDKRRETYTLSRSTSFGRRTREPVSPGKGGSHLNDSWSGTRNFSNTNRDMSRNLSGKGFSNQGDDAIGSGEIINETSWGHGRERDVKKTSKWDKQVSPSSEMTARNALSGAASESSAAHSVNPTVSSSVGTTQNAATANESEKIWHYQDPSGKVQGPFSMVQLRKWSNTGYFPTDLRIWRISDQQEDSLLLTDVLAGKISKDTPLTSNSLQVHPNSSPFVGRPQGGTLQSGVDGQNASSSNSHTNPTSYDQSSGGRWKSQNEVSPTGRPVSGSIKVPRYSGERWSSDHGNKNFTNLPSPTPSSGGTKEQPFQVAASFMEAKSLSGTGGGGLHGSSVMQGSENDPLRSHLGRNSSEKGMGSGPINALQNHQSQPVRQSPIIDDASLNPAADIRSISANLQSLVQSINSRNPPIEAHGRGSGSILKRETDTSEAWQNAQSHKVESNVSSSMPPAQTLHSRWGEMSPAQNAAVTSFSAGSSTSSFSSAGLSNFPSSDPWRSTAPISNNPQHIQCSTPPNLAWGMGAPEGQSTVPRPGSESQNQTWGPMPSGNPNMGWGPTAPPPNASAMMWGTTAQSSGPAATNPGWIAPGQGPAAGNNIQGWPAHSPMPPPVNATPGWVGSNVAPMPPMNMNPSWLVPSVNQNMWGNEHGKNGNRFSNQKDGGSHGGDPGNGDKSWGMQPSFGGGNSRSPYNRVQKLCKYHESGHCKKGGTCDYRHK 1790
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16830649 16844337 + MELO3C013424.2.1 Cme01g01347 318323

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g01347 1790 MobiDBLite consensus disorder prediction 1397 1451 - -
Cme01g01347 1790 MobiDBLite consensus disorder prediction 1106 1137 - -
Cme01g01347 1790 MobiDBLite consensus disorder prediction 1046 1065 - -
Cme01g01347 1790 Pfam Plus-3 domain 876 980 IPR004343 GO:0003677
Cme01g01347 1790 CDD Bbox1 562 587 - -
Cme01g01347 1790 SUPERFAMILY FYVE/PHD zinc finger 510 562 IPR011011 -
Cme01g01347 1790 SUPERFAMILY GYF domain 1209 1270 IPR035445 -
Cme01g01347 1790 MobiDBLite consensus disorder prediction 1718 1764 - -
Cme01g01347 1790 MobiDBLite consensus disorder prediction 1403 1451 - -
Cme01g01347 1790 MobiDBLite consensus disorder prediction 1046 1212 - -
Cme01g01347 1790 MobiDBLite consensus disorder prediction 1718 1734 - -
Cme01g01347 1790 ProSiteProfiles GYF domain profile. 1217 1271 IPR003169 GO:0005515
Cme01g01347 1790 PANTHER UNCHARACTERIZED 265 1789 - -
Cme01g01347 1790 SMART swib_2 739 817 IPR019835 -
Cme01g01347 1790 ProSiteProfiles Zinc finger C3H1-type profile. 1765 1790 IPR000571 GO:0046872
Cme01g01347 1790 ProSitePatterns Zinc finger PHD-type signature. 517 577 IPR019786 -
Cme01g01347 1790 MobiDBLite consensus disorder prediction 1170 1212 - -
Cme01g01347 1790 Gene3D - 1219 1275 IPR035445 -
Cme01g01347 1790 MobiDBLite consensus disorder prediction 1277 1343 - -
Cme01g01347 1790 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 19 265 1789 - -
Cme01g01347 1790 SUPERFAMILY Plus3-like 872 1002 IPR036128 GO:0003677
Cme01g01347 1790 CDD SWIB-MDM2_like 737 812 - -
Cme01g01347 1790 SUPERFAMILY SWIB/MDM2 domain 735 813 IPR036885 -
Cme01g01347 1790 CDD GYF 1217 1272 IPR003169 GO:0005515
Cme01g01347 1790 MobiDBLite consensus disorder prediction 1598 1639 - -
Cme01g01347 1790 MobiDBLite consensus disorder prediction 829 860 - -
Cme01g01347 1790 ProSiteProfiles SWIB/MDM2 domain profile. 731 814 IPR003121 -
Cme01g01347 1790 ProSiteProfiles Zinc finger PHD-type profile. 514 580 IPR019787 -
Cme01g01347 1790 MobiDBLite consensus disorder prediction 1482 1529 - -
Cme01g01347 1790 SMART gyf_5 1218 1273 IPR003169 GO:0005515
Cme01g01347 1790 MobiDBLite consensus disorder prediction 1 20 - -
Cme01g01347 1790 MobiDBLite consensus disorder prediction 1152 1169 - -
Cme01g01347 1790 Pfam SWIB/MDM2 domain 739 812 IPR003121 -
Cme01g01347 1790 Gene3D SWIB/MDM2 domain 726 821 IPR036885 -
Cme01g01347 1790 SMART PHD_3 516 562 IPR001965 -
Cme01g01347 1790 Gene3D - 872 1002 IPR036128 GO:0003677
Cme01g01347 1790 MobiDBLite consensus disorder prediction 1605 1622 - -
Cme01g01347 1790 CDD PHD5_NSD 516 561 - -
Cme01g01347 1790 MobiDBLite consensus disorder prediction 1500 1529 - -
Cme01g01347 1790 MobiDBLite consensus disorder prediction 1277 1384 - -
Cme01g01347 1790 ProSiteProfiles Plus3 domain profile. 871 1004 IPR004343 GO:0003677
Cme01g01347 1790 MobiDBLite consensus disorder prediction 662 728 - -
Cme01g01347 1790 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 504 608 IPR013083 -
Cme01g01347 1790 MobiDBLite consensus disorder prediction 471 504 - -
Cme01g01347 1790 Pfam GYF domain 1220 1260 IPR003169 GO:0005515
Cme01g01347 1790 MobiDBLite consensus disorder prediction 1361 1384 - -
Cme01g01347 1790 SMART rtf1 871 981 IPR004343 GO:0003677
Cme01g01347 1790 MobiDBLite consensus disorder prediction 1550 1569 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g01347 - - - csv:101218325 3291.9
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01347 Cme-Chr1:16830649 Cme07g01693 Cme-Chr7:22494934 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g38 . . . . . . . . Cmo19g00701 . . . . . Sed05g2290 Cpe04g00103 Cpe15g00561 Bhi05g01262 Tan02g0757 Cmetu01g2730 . . . . Cla02g00488 Cam02g0497 Cec02g0498 Cco02g0503 Clacu02g0501 Cmu02g0496 Cre02g0829 Cone12ag1185 Cone8ag1230 . . . Csa07g00034 . Cme01g01347 Blo04g00538 . . . Bpe15g00843 . . . . . . . . . Car19g00533 . . . . . . . . . Cla02g01127 Cam02g1202 Cec02g1205 Cco02g1255 Clacu02g1191 Cmu02g1153 Cre02g1463 . . Chy01g00747 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007589 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40750 PF03126 Plus-3 1.40E-24 No_clan Cme TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme01g01347 Cme_Chr01 FPKM 8.145303 12.539743 7.25514 8.499358 17.225447 17.877289 19.098063 1.798212 2.127973 2.293794