Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g01353 ATGAAGATCCGTTGCGATGTTTGTGATCAAACCGAGGCCTCTGTTTTTTGTTATGCTGATGAAGCTGCTCTTTGCCATGCCTGTGATCTCCATGTTCATCGTGCTAATAAGCTCGCTGGTAAACACTCCAGATTCTCTTTACTTCAACCCATCAAAAAGGATTCTCCTCCTTGCGATATCTGTCAGGAACGGAGAGCGCTTGTATTCTGTCAACAAGATAGGGCAATTCTTTGCAGAGAATGCGACATTTCGATTCACGAAACCAACGAACATACACAAAAGCACAATCGCTTTCTTCTAACAGGTGTGAAGCTTTCTTCAACTTGTTTTTCGTATCAAACATCTTCATCCTCCAATGGCTGTGATATCGATGCCCCCATGGATGTTAAAACTGGAAGCTCCAACGCTTCTTGCAGCAAAAGACCTAAAATGGCGGCAAAAGATCAACAAATATCAACTTCACATTCCGCTGAAAAAGCTACTCCTCCATCCACAAGCAATCATCTGGTCGATCAAGACGGTCAAGCATTAAGCGACGGCGGTTCGTTCTCGACGAGCAGCATATCAGAGTATTTGGAGACATTACCGGGATGGTGTGTGGAAGAGTTTCTAGATCCTTCCGCCGCCGCTGCTGCCGCCGCTGCCGCCAATCGTTTCTGTAAGCTTTGCAGTACATTGCCTCAGTATTAA 690 45.51 MKIRCDVCDQTEASVFCYADEAALCHACDLHVHRANKLAGKHSRFSLLQPIKKDSPPCDICQERRALVFCQQDRAILCRECDISIHETNEHTQKHNRFLLTGVKLSSTCFSYQTSSSSNGCDIDAPMDVKTGSSNASCSKRPKMAAKDQQISTSHSAEKATPPSTSNHLVDQDGQALSDGGSFSTSSISEYLETLPGWCVEEFLDPSAAAAAAAAANRFCKLCSTLPQY 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16917918 16919435 - MELO3C013430.2.1 Cme01g01353 318329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g01353 229 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Cme01g01353 229 Gene3D Classic Zinc Finger 1 100 - -
Cme01g01353 229 CDD Bbox1_BBX-like 57 100 - -
Cme01g01353 229 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 214 - -
Cme01g01353 229 CDD Bbox1_BBX-like 5 47 - -
Cme01g01353 229 MobiDBLite consensus disorder prediction 132 182 - -
Cme01g01353 229 SMART bboxneu5 53 100 IPR000315 GO:0008270
Cme01g01353 229 SMART bboxneu5 4 47 IPR000315 GO:0008270
Cme01g01353 229 PANTHER B-BOX ZINC FINGER PROTEIN 20 1 214 - -
Cme01g01353 229 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Cme01g01353 229 Pfam B-box zinc finger 3 44 IPR000315 GO:0008270
Cme01g01353 229 Pfam B-box zinc finger 55 92 IPR000315 GO:0008270
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme01g01353 Cme11g00162 CCT
Cme01g01353 Cme11g00162 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00281 Cme-Chr1:2119987 Cme01g01353 Cme-Chr1:16917918 3.16E-45 dispersed
Cme01g01353 Cme-Chr1:16917918 Cme07g01351 Cme-Chr7:19039927 1.75E-35 dispersed
Cme01g01353 Cme-Chr1:16917918 Cme11g00162 Cme-Chr11:1739205 4.26E-54 wgd
Cme01g01353 Cme-Chr1:16917918 Cme03g01907 Cme-Chr3:27183411 8.36E-55 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40751 PF00643 zf-B_box 5.20E-07 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g01353 - - csv:101212584 401.364