Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cme01g01361 | TCGTCGCCTGATGATTCATTCTCTAGTCCCATCGGAAACACCGTCTCTTCCTCTGGCGACGGTTATCGCCGTCGAAGCCGTCGCCGGTCATCTACTCCTTCGGAAATGGCTACGCCGCCGCGTCAACGATCCCGATTGGTCTCGTCGGAAAACACCCCGACGGCTAAGGAGCCGCGCTCTCGCCGGCGAGGCGGTGGGCGGAGGGCGTCTGGTAATGACGTGCCTCCGGTGGCTGCTACACCTTCTTCGACGGATGATATTCCGCCATCGACGGAACCTGGCGATGGCGATGACATGGATGAGGATCATCCGACCTTTGTATGGGGGACGAATATCAGTGTCGATGATGTAAAGGGAGCTATCATACGGTTTTTGAGGCATTTCCGCGATCGTCAGGCGTCGCAATCTGAGGGGGATTTTCATACTGAGGGAAAATACGCGGAGGTAATCAAGAGGGTTCTTGAAAATGAAGGGGATTCGCTTGATGTGGACGCGCAGGACTTGTTCAATTACGATGCGGATTTATATACGAAGATGGTGAGGTACCCACTTGAGGTTCTTGCAATATTTGATATTGTTCTGATGGAAATGGTACCCCAAATCAACCCATTGTTTGAAAAGCACATTCAAACTCGGATATTCAATCTCAAAACTTCTACTTCAATGAGAAATCTTAACCCATCTGACATTGAGAGGATGGTGTCACTGAAGGGGATGATTATACGGTGTAGTTCGATAATTCCCGAGATCAGGGAGGCAATATTTAGATGTCTGGTATGCGGATACTACACTGACCCGGTAGCTATTGAAAGAGGACAAATAAGTGAGCCCACTATATGCTTGAAGGAAGAGTGCCAAGCAAGGAATTCCATGACATTGGTTCATAATCGATGCAGGTTTGCTGATAAGCAGATTGTGAGGCTTCAGGAGACTCCCGATGAGATACCTGAAGGAGGGACGCCTCATACTGTAAGCTTGTTAATGCATGACAAGCTGGTTGATACTGGAAAGCCTGGTGACAGAGTTGAGGTCACTGGGATTTACAGGGCCATGAGTGTGAGAGTTGGACCAACCCAGAGAACTGTAAAATCATTGTTCAAGACTTATATTGACTGTCTTCATATAAAGAAGACTGATAAGTCAAGAATGGTGGCAGATCTGACTGAAGCTGAGAACCGGTTGGGTGGAAATGTGGATGATCTCTCATTTGATGAAGAGAAGGTGGAAGAGTTGAAAGAACTCTCCAAAAAACCTGATATATATGATAGACTGACCAGATCTTTGGCTCCTAATATTTGGGAGCTTGATGATGTAAAGAAGGGCCTTCTTTGCCAGCTCTTTGGTGGGAATGCTTTGAAATTGGCATCCGGTGCAAGCTTTCGTGGAGATATTAACATACTTCTCGTTGGTGATCCTGGAACCAGCAAGTCTCAGCTTCTCCAATATATACATAAACTATCTCCCCGTGGCATTTACACCAGTGGAAGGGGTAGCTCTGCTGTTGGTTTGACAGCTTATGTATCCAAAGATCCTGAAACAGGCGAAACAGTACTGGAGAGTGGAGCCTTGGTTTTGAGTGACAGAGGCATTTGCTGCATTGATGAATTTGATAAAATGTCTGAAAATGCAAGGAGCATGTTGCACGAGGTGATGGAACAACAAACTGTTTCGATAGCAAAGGCTGGGATTATTGCTTCTCTTAATGCCAGGACTTCAGTATTAGCTTGTGCAAATCCTAGTGGTTCACGTTATAATCCTCGCTTATCTGTAATTGATAACATACACCTTCCACCTACTTTGTTATCAAGGTTTGACTTGATTTATCTAATTTTGGATAAAGCTGATGAGCAAACAGATAGGCGCCTAGCTAAGCATATTGTCTCACTGCACTTTGACAATCCTGAGGGAATTGAGCAGGATTTCTTGGACCTTCATACCTTGACTTCATATGTCAGCTATGCTAGGAAAAACATTCACCCAAAATTGTCAGACGAGGCAGCTGAAGAGTTGACTAGAGGCTATGTTGAGCTGAGGAGAAGAGGAAACTTTCCAGGCAGTAGTAAAAAGGTCATTACAGCAACCCCAAGACAGATTGAGAGTTTAATACGTCTAAGCGAAGCCCTTGCTCGAATACGTTTCTCAGAATGGGTTGAAAAGGGTGACGTTCTCGAATCATTCCGTCTTCTAGAAGTTGCAATGCAACAATCTGCAACAGATCATTCTACAGGAACTATTGACATGGATTTGATCACCACGGGAGTATCGGCAAGCGAAAGGTTACGAAGGGAGAGTTTATTATCTGCAACTCGAAACATTATTATGGAAAAAATGCAGCTTGGAGGACCCTCCATGCGCTTGTCAGAGTTGTTGGATGAGCTGAAGAAGAAGAATCCTGATAATGAAGTCCATCTCAACAACCTTAGAAACACAGTATCAACGCTTGCAAGTGAGGGATTTGTAGAGATCCGTGGTGATAACATTAAGAGAATATGA | 2493 | 45.05 | SSPDDSFSSPIGNTVSSSGDGYRRRSRRRSSTPSEMATPPRQRSRLVSSENTPTAKEPRSRRRGGGRRASGNDVPPVAATPSSTDDIPPSTEPGDGDDMDEDHPTFVWGTNISVDDVKGAIIRFLRHFRDRQASQSEGDFHTEGKYAEVIKRVLENEGDSLDVDAQDLFNYDADLYTKMVRYPLEVLAIFDIVLMEMVPQINPLFEKHIQTRIFNLKTSTSMRNLNPSDIERMVSLKGMIIRCSSIIPEIREAIFRCLVCGYYTDPVAIERGQISEPTICLKEECQARNSMTLVHNRCRFADKQIVRLQETPDEIPEGGTPHTVSLLMHDKLVDTGKPGDRVEVTGIYRAMSVRVGPTQRTVKSLFKTYIDCLHIKKTDKSRMVADLTEAENRLGGNVDDLSFDEEKVEELKELSKKPDIYDRLTRSLAPNIWELDDVKKGLLCQLFGGNALKLASGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGRGSSAVGLTAYVSKDPETGETVLESGALVLSDRGICCIDEFDKMSENARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIDNIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFDNPEGIEQDFLDLHTLTSYVSYARKNIHPKLSDEAAEELTRGYVELRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRFSEWVEKGDVLESFRLLEVAMQQSATDHSTGTIDMDLITTGVSASERLRRESLLSATRNIIMEKMQLGGPSMRLSELLDELKKKNPDNEVHLNNLRNTVSTLASEGFVEIRGDNIKRI | 830 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 16983976 | 16989012 | + | MELO3C013436.2.1 | Cme01g01361 | 318337 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cme01g01361 | 830 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 461 | 476 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Cme01g01361 | 830 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 549 | 562 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Cme01g01361 | 830 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 573 | 585 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Cme01g01361 | 830 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 600 | 608 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Cme01g01361 | 830 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 521 | 535 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Cme01g01361 | 830 | Gene3D | - | 111 | 216 | - | - | |
| Cme01g01361 | 830 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
| Cme01g01361 | 830 | Pfam | MCM P-loop domain | 408 | 630 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Cme01g01361 | 830 | CDD | MCM4 | 423 | 732 | - | - | |
| Cme01g01361 | 830 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 78 | 829 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Cme01g01361 | 830 | SMART | mcm | 218 | 734 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Cme01g01361 | 830 | Gene3D | - | 222 | 361 | IPR012340 | - | |
| Cme01g01361 | 830 | Pfam | MCM OB domain | 222 | 351 | IPR033762 | - | |
| Cme01g01361 | 830 | Gene3D | - | 398 | 738 | IPR027417 | - | |
| Cme01g01361 | 830 | MobiDBLite | consensus disorder prediction | 1 | 105 | - | - | |
| Cme01g01361 | 830 | Gene3D | - | 249 | 301 | - | - | |
| Cme01g01361 | 830 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 431 | 746 | IPR027417 | - | |
| Cme01g01361 | 830 | MobiDBLite | consensus disorder prediction | 32 | 54 | - | - | |
| Cme01g01361 | 830 | Pfam | MCM N-terminal domain | 120 | 218 | IPR027925 | - | |
| Cme01g01361 | 830 | ProSitePatterns | MCM family signature. | 529 | 537 | IPR018525 | GO:0003677|GO:0005524|GO:0006260 | |
| Cme01g01361 | 830 | Pfam | MCM AAA-lid domain | 646 | 732 | IPR041562 | - | |
| Cme01g01361 | 830 | ProSiteProfiles | MCM family domain profile. | 420 | 626 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Cme01g01361 | 830 | Gene3D | - | 739 | 828 | IPR036388 | - | |
| Cme01g01361 | 830 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM4 | 78 | 829 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Cme01g01361 | 830 | SUPERFAMILY | Nucleic acid-binding proteins | 138 | 372 | IPR012340 | - | |
| Cme01g01361 | 830 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 734 | 743 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Cme01g01361 | 830 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 436 | 447 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Cme01g01361 | 830 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 244 | 257 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Cme01g01361 | 830 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 295 | 307 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Cme01g01361 | 830 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 582 | 599 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cme01g01361 | Cme-Chr1:16983976 | Cme08g00004 | Cme-Chr8:38932 | 1.67E-116 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cme01g01361 | K02212 | - | csv:101211850 | 1581.23 |