Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g01361 TCGTCGCCTGATGATTCATTCTCTAGTCCCATCGGAAACACCGTCTCTTCCTCTGGCGACGGTTATCGCCGTCGAAGCCGTCGCCGGTCATCTACTCCTTCGGAAATGGCTACGCCGCCGCGTCAACGATCCCGATTGGTCTCGTCGGAAAACACCCCGACGGCTAAGGAGCCGCGCTCTCGCCGGCGAGGCGGTGGGCGGAGGGCGTCTGGTAATGACGTGCCTCCGGTGGCTGCTACACCTTCTTCGACGGATGATATTCCGCCATCGACGGAACCTGGCGATGGCGATGACATGGATGAGGATCATCCGACCTTTGTATGGGGGACGAATATCAGTGTCGATGATGTAAAGGGAGCTATCATACGGTTTTTGAGGCATTTCCGCGATCGTCAGGCGTCGCAATCTGAGGGGGATTTTCATACTGAGGGAAAATACGCGGAGGTAATCAAGAGGGTTCTTGAAAATGAAGGGGATTCGCTTGATGTGGACGCGCAGGACTTGTTCAATTACGATGCGGATTTATATACGAAGATGGTGAGGTACCCACTTGAGGTTCTTGCAATATTTGATATTGTTCTGATGGAAATGGTACCCCAAATCAACCCATTGTTTGAAAAGCACATTCAAACTCGGATATTCAATCTCAAAACTTCTACTTCAATGAGAAATCTTAACCCATCTGACATTGAGAGGATGGTGTCACTGAAGGGGATGATTATACGGTGTAGTTCGATAATTCCCGAGATCAGGGAGGCAATATTTAGATGTCTGGTATGCGGATACTACACTGACCCGGTAGCTATTGAAAGAGGACAAATAAGTGAGCCCACTATATGCTTGAAGGAAGAGTGCCAAGCAAGGAATTCCATGACATTGGTTCATAATCGATGCAGGTTTGCTGATAAGCAGATTGTGAGGCTTCAGGAGACTCCCGATGAGATACCTGAAGGAGGGACGCCTCATACTGTAAGCTTGTTAATGCATGACAAGCTGGTTGATACTGGAAAGCCTGGTGACAGAGTTGAGGTCACTGGGATTTACAGGGCCATGAGTGTGAGAGTTGGACCAACCCAGAGAACTGTAAAATCATTGTTCAAGACTTATATTGACTGTCTTCATATAAAGAAGACTGATAAGTCAAGAATGGTGGCAGATCTGACTGAAGCTGAGAACCGGTTGGGTGGAAATGTGGATGATCTCTCATTTGATGAAGAGAAGGTGGAAGAGTTGAAAGAACTCTCCAAAAAACCTGATATATATGATAGACTGACCAGATCTTTGGCTCCTAATATTTGGGAGCTTGATGATGTAAAGAAGGGCCTTCTTTGCCAGCTCTTTGGTGGGAATGCTTTGAAATTGGCATCCGGTGCAAGCTTTCGTGGAGATATTAACATACTTCTCGTTGGTGATCCTGGAACCAGCAAGTCTCAGCTTCTCCAATATATACATAAACTATCTCCCCGTGGCATTTACACCAGTGGAAGGGGTAGCTCTGCTGTTGGTTTGACAGCTTATGTATCCAAAGATCCTGAAACAGGCGAAACAGTACTGGAGAGTGGAGCCTTGGTTTTGAGTGACAGAGGCATTTGCTGCATTGATGAATTTGATAAAATGTCTGAAAATGCAAGGAGCATGTTGCACGAGGTGATGGAACAACAAACTGTTTCGATAGCAAAGGCTGGGATTATTGCTTCTCTTAATGCCAGGACTTCAGTATTAGCTTGTGCAAATCCTAGTGGTTCACGTTATAATCCTCGCTTATCTGTAATTGATAACATACACCTTCCACCTACTTTGTTATCAAGGTTTGACTTGATTTATCTAATTTTGGATAAAGCTGATGAGCAAACAGATAGGCGCCTAGCTAAGCATATTGTCTCACTGCACTTTGACAATCCTGAGGGAATTGAGCAGGATTTCTTGGACCTTCATACCTTGACTTCATATGTCAGCTATGCTAGGAAAAACATTCACCCAAAATTGTCAGACGAGGCAGCTGAAGAGTTGACTAGAGGCTATGTTGAGCTGAGGAGAAGAGGAAACTTTCCAGGCAGTAGTAAAAAGGTCATTACAGCAACCCCAAGACAGATTGAGAGTTTAATACGTCTAAGCGAAGCCCTTGCTCGAATACGTTTCTCAGAATGGGTTGAAAAGGGTGACGTTCTCGAATCATTCCGTCTTCTAGAAGTTGCAATGCAACAATCTGCAACAGATCATTCTACAGGAACTATTGACATGGATTTGATCACCACGGGAGTATCGGCAAGCGAAAGGTTACGAAGGGAGAGTTTATTATCTGCAACTCGAAACATTATTATGGAAAAAATGCAGCTTGGAGGACCCTCCATGCGCTTGTCAGAGTTGTTGGATGAGCTGAAGAAGAAGAATCCTGATAATGAAGTCCATCTCAACAACCTTAGAAACACAGTATCAACGCTTGCAAGTGAGGGATTTGTAGAGATCCGTGGTGATAACATTAAGAGAATATGA 2493 45.05 SSPDDSFSSPIGNTVSSSGDGYRRRSRRRSSTPSEMATPPRQRSRLVSSENTPTAKEPRSRRRGGGRRASGNDVPPVAATPSSTDDIPPSTEPGDGDDMDEDHPTFVWGTNISVDDVKGAIIRFLRHFRDRQASQSEGDFHTEGKYAEVIKRVLENEGDSLDVDAQDLFNYDADLYTKMVRYPLEVLAIFDIVLMEMVPQINPLFEKHIQTRIFNLKTSTSMRNLNPSDIERMVSLKGMIIRCSSIIPEIREAIFRCLVCGYYTDPVAIERGQISEPTICLKEECQARNSMTLVHNRCRFADKQIVRLQETPDEIPEGGTPHTVSLLMHDKLVDTGKPGDRVEVTGIYRAMSVRVGPTQRTVKSLFKTYIDCLHIKKTDKSRMVADLTEAENRLGGNVDDLSFDEEKVEELKELSKKPDIYDRLTRSLAPNIWELDDVKKGLLCQLFGGNALKLASGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGRGSSAVGLTAYVSKDPETGETVLESGALVLSDRGICCIDEFDKMSENARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIDNIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFDNPEGIEQDFLDLHTLTSYVSYARKNIHPKLSDEAAEELTRGYVELRRRGNFPGSSKKVITATPRQIESLIRLSEALARIRFSEWVEKGDVLESFRLLEVAMQQSATDHSTGTIDMDLITTGVSASERLRRESLLSATRNIIMEKMQLGGPSMRLSELLDELKKKNPDNEVHLNNLRNTVSTLASEGFVEIRGDNIKRI 830
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16983976 16989012 + MELO3C013436.2.1 Cme01g01361 318337

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g01361 830 PRINTS Mini-chromosome maintenance (MCM) protein family signature 461 476 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cme01g01361 830 PRINTS Mini-chromosome maintenance (MCM) protein family signature 549 562 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cme01g01361 830 PRINTS Mini-chromosome maintenance (MCM) protein family signature 573 585 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cme01g01361 830 PRINTS Mini-chromosome maintenance (MCM) protein family signature 600 608 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cme01g01361 830 PRINTS Mini-chromosome maintenance (MCM) protein family signature 521 535 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cme01g01361 830 Gene3D - 111 216 - -
Cme01g01361 830 MobiDBLite consensus disorder prediction 1 20 - -
Cme01g01361 830 Pfam MCM P-loop domain 408 630 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cme01g01361 830 CDD MCM4 423 732 - -
Cme01g01361 830 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 78 829 IPR031327 GO:0003677|GO:0005524|GO:0032508
Cme01g01361 830 SMART mcm 218 734 IPR031327 GO:0003677|GO:0005524|GO:0032508
Cme01g01361 830 Gene3D - 222 361 IPR012340 -
Cme01g01361 830 Pfam MCM OB domain 222 351 IPR033762 -
Cme01g01361 830 Gene3D - 398 738 IPR027417 -
Cme01g01361 830 MobiDBLite consensus disorder prediction 1 105 - -
Cme01g01361 830 Gene3D - 249 301 - -
Cme01g01361 830 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 431 746 IPR027417 -
Cme01g01361 830 MobiDBLite consensus disorder prediction 32 54 - -
Cme01g01361 830 Pfam MCM N-terminal domain 120 218 IPR027925 -
Cme01g01361 830 ProSitePatterns MCM family signature. 529 537 IPR018525 GO:0003677|GO:0005524|GO:0006260
Cme01g01361 830 Pfam MCM AAA-lid domain 646 732 IPR041562 -
Cme01g01361 830 ProSiteProfiles MCM family domain profile. 420 626 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cme01g01361 830 Gene3D - 739 828 IPR036388 -
Cme01g01361 830 PANTHER DNA REPLICATION LICENSING FACTOR MCM4 78 829 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Cme01g01361 830 SUPERFAMILY Nucleic acid-binding proteins 138 372 IPR012340 -
Cme01g01361 830 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 734 743 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Cme01g01361 830 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 436 447 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Cme01g01361 830 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 244 257 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Cme01g01361 830 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 295 307 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Cme01g01361 830 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 582 599 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g01361 K02212 MCM4, CDC54; DNA replication licensing factor MCM4 [EC:5.6.2.3] - csv:101211850 1581.23
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01361 Cme-Chr1:16983976 Cme08g00004 Cme-Chr8:38932 1.67E-116 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g15 . . . . . . . . Cmo19g00696 . . . . . . Cpe04g00111 Cpe15g00556 . . . . . . . Cla02g00495 Cam02g0506 Cec02g0506 Cco02g0511 Clacu02g0508 Cmu02g0504 Cre02g0837 . . Cone3ag1220 . . Csa07g00021 . Cme01g01361 . . . . . . . . . . . . Cma19g00684 . Car19g00528 . . . . . . . . . . . . . . . . Lsi11g01129 . Chy01g00756 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme08g00074 . 94 784 Core DNA Replication Machinery Family AT4G14700 66.2 6.8e-266 913.7
Cme08g00074 . 94 784 Core DNA Replication Machinery Family AT4G12620 68.1 8.9e-274 939.9
Cme03g02018 . 2 360 Core DNA Replication Machinery Family AT2G37560 65.7 1.7e-141 499.2
Cme10g01189 . 9 418 Core DNA Replication Machinery Family AT2G01120 65.0 5.7e-155 544.3
Cme11g02167 . 3 536 Core DNA Replication Machinery Family AT4G29910 59.1 4.1e-177 618.2
Cme05g00896 . 1 277 Core DNA Replication Machinery Family AT1G26840 63.2 1.7e-91 332.8
Cme01g01521 . 4 800 Core DNA Replication Machinery Family AT1G79150 58.0 3.0e-245 845.1
Cme04g01735 . 1 939 Core DNA Replication Machinery Family AT1G44900 73.8 0.0e+00 1311.6
Cme08g00150 . 1 575 Core DNA Replication Machinery Family AT5G46280 80.7 3.0e-268 921.0
Cme01g01361 . 80 830 Core DNA Replication Machinery Family AT2G16440 77.5 0.0e+00 1146.7
Cme05g01856 . 1 742 Core DNA Replication Machinery Family AT2G07690 76.2 0.0e+00 1088.6
Cme08g00004 . 14 785 Core DNA Replication Machinery Family AT5G44635 69.1 0.0e+00 1094.7
Cme01g02199 . 4 722 Core DNA Replication Machinery Family AT4G02060 85.1 0.0e+00 1217.6
Cme11g01369 . 12 458 Core DNA Replication Machinery Family AT2G29680 53.3 1.9e-136 483.0
Cme11g01369 . 22 427 Core DNA Replication Machinery Family AT1G07270 52.8 1.7e-120 429.9
Cme01g01799 . 1 593 Core DNA Replication Machinery Family AT3G25100 76.2 2.5e-257 884.8
Cme04g02557 . 12 792 Core DNA Replication Machinery Family AT3G09660 73.0 0.0e+00 1098.2
Cme01g00219 . 10 477 Core DNA Replication Machinery Family AT2G14050 76.8 2.9e-211 731.9
Cme01g02620 . 1 200 Core DNA Replication Machinery Family AT1G80190 66.3 4.0e-74 274.6
Cme07g01243 . 1 145 Core DNA Replication Machinery Family AT3G12530 71.0 2.7e-59 224.9
Cme03g00250 . 118 312 Core DNA Replication Machinery Family AT1G19080 54.0 2.5e-46 182.2
Cme03g00250 . 118 312 Core DNA Replication Machinery Family AT3G55490 54.0 2.5e-46 182.2
Cme06g00165 . 1 188 Core DNA Replication Machinery Family AT5G49010 55.3 3.3e-46 181.8
Cme11g00335 . 9 1546 Core DNA Replication Machinery Family AT5G67100 60.7 0.0e+00 1761.5
Cme12g01926 . 3 622 Core DNA Replication Machinery Family AT1G67630 62.3 5.3e-218 754.2
Cme11g02327 . 8 412 Core DNA Replication Machinery Family AT1G67320 64.3 9.1e-165 577.0
Cme09g00110 . 1 118 Core DNA Replication Machinery Family AT5G41880 75.4 1.9e-52 203.8
Cme08g01142 . 1 1086 Core DNA Replication Machinery Family AT5G63960 80.6 0.0e+00 1794.6
Cme04g02239 . 1 495 Core DNA Replication Machinery Family AT2G42120 55.3 4.4e-150 528.1
Cme11g02327 . 8 412 Core DNA Replication Machinery Family AT1G67320 64.3 9.1e-165 577.0
Cme09g01463 . 34 158 Core DNA Replication Machinery Family AT1G09815 60.8 6.3e-38 153.7
Cme11g01900 . 1 2095 Core DNA Replication Machinery Family AT1G08260 71.2 0.0e+00 2984.5
Cme09g00647 . 7 1305 Core DNA Replication Machinery Family AT1G08260 60.8 0.0e+00 1701.8
Cme11g01900 . 25 2206 Core DNA Replication Machinery Family AT2G27120 67.5 0.0e+00 2938.3
Cme09g00647 . 29 1305 Core DNA Replication Machinery Family AT2G27120 59.2 0.0e+00 1620.1
Cme12g02044 . 7 487 Core DNA Replication Machinery Family AT5G22110 68.9 1.4e-192 669.5
Cme05g00231 . 1 926 Core DNA Replication Machinery Family AT5G22010 64.0 2.1e-308 1055.0
Cme06g02668 . 1 331 Core DNA Replication Machinery Family AT1G63160 91.0 1.6e-173 605.5
Cme08g01938 . 1 354 Core DNA Replication Machinery Family AT5G27740 85.3 1.0e-178 622.9
Cme07g00817 . 1 290 Core DNA Replication Machinery Family AT1G21690 80.4 2.7e-128 455.3
Cme03g00527 . 39 254 Core DNA Replication Machinery Family AT1G77470 78.3 6.1e-89 324.7
Cme06g02413 . 32 705 Core DNA Replication Machinery Family AT2G06510 50.7 1.3e-197 686.4
Cme02g01827 . 1 634 Core DNA Replication Machinery Family AT5G08020 66.3 2.8e-240 828.2
Cme06g02413 . 10 814 Core DNA Replication Machinery Family AT5G45400 52.8 7.2e-234 807.4
Cme02g01827 . 1 629 Core DNA Replication Machinery Family AT5G61000 64.3 9.1e-234 806.6
Cme06g02413 . 5 800 Core DNA Replication Machinery Family AT4G19130 53.9 9.9e-230 793.5
Cme04g02390 . 37 142 Core DNA Replication Machinery Family AT4G18590 65.1 1.6e-37 152.1
Cme02g00001 . 1 377 Core DNA Replication Machinery Family AT5G26680 85.0 7.7e-181 630.2
Cme07g01888 . 8 297 Core DNA Replication Machinery Family AT2G25100 68.3 3.7e-115 411.4
Cme11g01841 . 1 849 Core DNA Replication Machinery Family AT1G08130 62.9 1.0e-287 986.1
Cme11g01841 . 201 849 Core DNA Replication Machinery Family AT1G49250 64.2 9.5e-234 806.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007588 1 2 1 1 1 1 3 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme01g01361 Cme_Chr01 FPKM 17.405359 15.622291 28.567444 27.833616 16.252878 18.939852 19.119566 44.671543 44.430656 47.13467