Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g01362 GGAAATACCTATAATTTAGGGATTAAAAAAAGAAGAGATGGAATCGTGTTAACGTGGATCGATCAAGAGCTTTCAACTCATCCCCTTCATCCGATTCCCTCTCTCTTCAAACTCCATCATCAAGATTCACAGATTGGCCTTTCAACACTTCCATCCCAGGAACCTCCCTCTCCTCCAACAATGGGCGATACCCGAGGTGGTTGCTGTCCACCCATGGATCTCTTCCGCTCCGAGCCCATGCAGCTGGTCCAGCTCATCATTCCCATCGAGTCTGCGCATCGCACCATCTCCTACCTCGGTGATCTCGGCCTTCTTCAGTTCAAAGATCTCAACGCGGATAAAAGCCCATTCCAGCGTACTTATGCTGCACAGATTAAAAGATGTGGAGAGATGGCACGCAAATTGAATTTTTTCAAGGAACAGATTTTGAAGGCTGGATTATCAAGCAAAAGCTCCGTGTCACAAGTTGATATCAATATAGACGACCTTGAGGTCAAACTTGGTGAGCTTGAGGCAGAACTGGTTGAGATAAATGCTAATAGTGAGAAGCTACAACGTTCCTACAATGAACTTTTGGAGTATAAGCTTGTTCTGCAGAAGGCTGGAGAGTTTTTCACTGCAGCGCAAAGCAGTGCTGTAGAGCAGCAAAGGGAGTTCGAATCACGACGAACTGGTGGAGATTCAATAGAAGTTCCATTGTTGTTGGAACAAGAATCACTTGTGGATCAGTCAAAGCCGGTTAATTTGGGATTTCTCTCTGGTCTTGTTCCTCGGGAAAAATCTATGGCATTTGAGAGGATACTTTTTCGTGCTACTAGGGGCAATGTGTTTCTGAAGCAGACTGAAGTTGAGGATCCTGTTGCAGATCCTGTTTCTGGAGAGAAGGTTGAGAAAAATGTGTTTATTGTTTTCTACTCTGGAGAAAGAGCAAAGAGTAAAATTCTAAAAATATGTGAGGCATTTGGTGCAAATCGATACCCTTTTACTGAGGACGTGGGGAAACAAGCCCAAATGATTGCTGAGGTTTCTGGAAAACTGTCTGAGCTGAAGACTACAATAGATATAGGGCTACTGCACCGGGGTAATCTGTTGCAGACTATTGGAGAGCATTTTGAAAATTGGAATCTCCTGGCGAGGAAGGAAAAGTCCATATACCACATATTGAACATGCTTAGCCTTGATGTAACAAAAAAATGTCTCGTTGCTGAGGGGTGGGGTCCTGTTTTTGCTACAAAGCAGATTCAAGATGCACTCCAGCGTGCAGCATCTGATTCCAACTCCCAGGTTGGACCAATTTTCCAGGTTTTATTAACTACAGAAGCACCACCTACGTATTTTCGGACAAACAAATTCTCCTCTGCTTTTCAAGAAATTGTCGATGCATATGGGGTGGCAAGGTATCAAGAAGCAAATCCTGGTGTATACACCATTGTCACGTTCCCATTTCTGTTTGCTGTTATGTTTGGCGATTGGGGGCATGGAATATGTCTGTTCCTTGCAACCCTGTATTTTATATTACGGGAAAAAAAACTTTCTTCTCAGAAGCTTGGAGATATCACTGAAATGGCCTTTGGTGGACGCTATGTCATTTTGATGATGTCACTATTTTCAATATACACTGGTCTGATCTATAACGAGTTCTTTTCAGTTCCATTTGGATTGTTTGGTCGCTCAGCCTATGAATGTCGTAGTCCTGATTGCAGTGATTCTACCACTATGGGGTTGATAAAGGTGGGTTCTACATATCCATTTGGCCTGGATCCTGTATGGCACGGCACTCGAAGTGAACTTCCATTTCTCAACTCTTTGAAAATGAAAATGTCAATCCTCCTTGGAGTTGCACAAATGAACCTTGGAATTATAATAAGCTATTTCAATGCTACATTTTTTAGGAACAGCATTAATATCTGGTTCCAATTTCTACCACAAATGATATTCCTGAACAGCCTATTCGGCTATCTTTCCCTTCTCATCATCATAAAGTGGTGCACCGGTTCAAATGCTGATCTGTACCATGTAATGATATACATGTTTCTAGGCCCTACCGACGATCTGGCTGAAAACCAACTTTTTCCTGGGCAGAAAAATGTTCAGATTGTGCTACTCTTACTGGCCCTTGTTGCCGTGCCGTGGATGCTGCTTCCAAAGCCTTTTCTTTTGAAGAGACAGCATGAACAGAGGTTCCAAGGTCAATCTTATGCACCCCTTCCAAGTGGTGATGATTCCCTCGAGTTGGATTCACATCATGATTCACATGGTCATGAGGAGTTTGAGTTCAGTGAGGTTTTTGTGCATCAGCTTATTCATACCATTGAATTTGTGCTTGGAGCAGTGTCAAATACAGCTTCCTATCTTCGTCTATGGGCTTTAAGTCTTGCACACTCAGAGTTGTCAAGCGTGTTTTACGACAAGGTTCTCGTTCTATCTGCGGGGTTCAACAACATTATAATCTTAATAGTAGGCATTATTGTTTTCATTTTTGCTACGGTTGGCGTGTTGCTACTGATGGAGACTTTAAGTGCCTTCCTTCACGCACTGCGTCTTCATTGGGTCGAGTTCCAAAACAAGTTCTACGAGGGAGACGGGTACAAATTCCATCCTTTCTCATTCGCATTGCTAGATGAAGATGATGATTGA 2637 42.93 GNTYNLGIKKRRDGIVLTWIDQELSTHPLHPIPSLFKLHHQDSQIGLSTLPSQEPPSPPTMGDTRGGCCPPMDLFRSEPMQLVQLIIPIESAHRTISYLGDLGLLQFKDLNADKSPFQRTYAAQIKRCGEMARKLNFFKEQILKAGLSSKSSVSQVDINIDDLEVKLGELEAELVEINANSEKLQRSYNELLEYKLVLQKAGEFFTAAQSSAVEQQREFESRRTGGDSIEVPLLLEQESLVDQSKPVNLGFLSGLVPREKSMAFERILFRATRGNVFLKQTEVEDPVADPVSGEKVEKNVFIVFYSGERAKSKILKICEAFGANRYPFTEDVGKQAQMIAEVSGKLSELKTTIDIGLLHRGNLLQTIGEHFENWNLLARKEKSIYHILNMLSLDVTKKCLVAEGWGPVFATKQIQDALQRAASDSNSQVGPIFQVLLTTEAPPTYFRTNKFSSAFQEIVDAYGVARYQEANPGVYTIVTFPFLFAVMFGDWGHGICLFLATLYFILREKKLSSQKLGDITEMAFGGRYVILMMSLFSIYTGLIYNEFFSVPFGLFGRSAYECRSPDCSDSTTMGLIKVGSTYPFGLDPVWHGTRSELPFLNSLKMKMSILLGVAQMNLGIIISYFNATFFRNSINIWFQFLPQMIFLNSLFGYLSLLIIIKWCTGSNADLYHVMIYMFLGPTDDLAENQLFPGQKNVQIVLLLLALVAVPWMLLPKPFLLKRQHEQRFQGQSYAPLPSGDDSLELDSHHDSHGHEEFEFSEVFVHQLIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYDKVLVLSAGFNNIIILIVGIIVFIFATVGVLLLMETLSAFLHALRLHWVEFQNKFYEGDGYKFHPFSFALLDEDDD 878
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16991930 17007849 + MELO3C013437.2.1 Cme01g01362 318338

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g01362 878 PIRSF ATP6V0A1 70 878 IPR026028 GO:0000220|GO:0046961
Cme01g01362 878 Coils Coil 153 187 - -
Cme01g01362 878 Pfam V-type ATPase 116kDa subunit family 98 870 IPR002490 GO:0033179|GO:0046961|GO:1902600
Cme01g01362 878 PANTHER V-TYPE PROTON ATPASE SUBUNIT A 63 877 - -
Cme01g01362 878 PANTHER VACUOLAR PROTON ATPASES 63 877 IPR002490 GO:0033179|GO:0046961|GO:1902600
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g01362 K02154 ATPeV0A, ATP6N; V-type H+-transporting ATPase subunit a - csv:101211364 1540.78
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01362 Cme-Chr1:16991930 Cme08g01948 Cme-Chr8:24114689 6.73E-07 dispersed
Cme09g00617 Cme-Chr9:6526035 Cme01g01362 Cme-Chr1:16991930 4.78E-14 transposed
Cme10g00913 Cme-Chr10:6656079 Cme01g01362 Cme-Chr1:16991930 9.79E-12 transposed
Cme11g01758 Cme-Chr11:25750228 Cme01g01362 Cme-Chr1:16991930 0 transposed
Cme01g01362 Cme-Chr1:16991930 Cme03g01909 Cme-Chr3:27216754 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g14 . . . . . Bpe12g00089 . . . . . . . . . Cpe04g00112 Cpe15g00555 . . . . . . . Cla02g00497 Cam02g0507 Cec02g0507 Cco02g0512 Clacu02g0509 Cmu02g0505 Cre02g0838 . . Cone3ag1221 Cone10ag1105 . Csa07g00020 . Cme01g01362 Blo04g00529 Blo13g00540 Bda15g01074 Bda14g00572 Bpe15g00852 . Bma03g00566 Bma08g00785 . . . . Cma19g00683 . Car19g00527 . . . . . . . . . . . . . . . . Lsi11g01128 . Chy01g00757 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme11g01758 . 73 886 Primary Pumps ATPases(2) AT2G28520 81.3 0.0e+00 1342.4
Cme01g01362 . 70 873 Primary Pumps ATPases(2) AT2G28520 63.2 1.6e-294 1008.8
Cme03g01909 . 2 519 Primary Pumps ATPases(2) AT2G28520 69.3 4.2e-215 745.0
Cme01g01362 . 66 878 Primary Pumps ATPases(2) AT2G21410 75.8 0.0e+00 1234.2
Cme11g01758 . 81 890 Primary Pumps ATPases(2) AT2G21410 62.5 2.3e-298 1021.5
Cme03g01909 . 9 524 Primary Pumps ATPases(2) AT2G21410 76.9 1.2e-238 823.2
Cme01g01362 . 68 878 Primary Pumps ATPases(2) AT4G39080 77.1 0.0e+00 1240.3
Cme11g01758 . 81 890 Primary Pumps ATPases(2) AT4G39080 63.4 2.6e-297 1018.1
Cme03g01909 . 9 524 Primary Pumps ATPases(2) AT4G39080 77.8 1.6e-238 822.8
Cme03g01900 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 1.4e-60 229.2
Cme06g00383 . 28 122 Primary Pumps ATPases(2) AT4G34720 98.9 1.9e-38 155.6
Cme06g00382 . 28 122 Primary Pumps ATPases(2) AT4G34720 98.9 1.9e-38 155.6
Cme03g01900 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 1.4e-66 249.6
Cme06g00383 . 2 122 Primary Pumps ATPases(2) AT1G75630 96.7 5.2e-50 194.5
Cme06g00382 . 2 122 Primary Pumps ATPases(2) AT1G75630 96.7 5.2e-50 194.5
Cme03g01900 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 4.2e-74 274.2
Cme06g00383 . 3 122 Primary Pumps ATPases(2) AT2G16510 99.2 6.0e-52 200.7
Cme06g00382 . 3 122 Primary Pumps ATPases(2) AT2G16510 99.2 6.0e-52 200.7
Cme06g00383 . 1 122 Primary Pumps ATPases(2) AT1G19910 99.2 3.1e-53 204.5
Cme06g00382 . 1 122 Primary Pumps ATPases(2) AT1G19910 99.2 3.1e-53 204.5
Cme03g01900 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.2e-52 202.6
Cme03g01656 . 4 180 Primary Pumps ATPases(2) AT2G25610 84.7 2.3e-70 262.3
Cme04g00385 . 7 160 Primary Pumps ATPases(2) AT2G25610 83.8 5.7e-61 231.1
Cme03g01900 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 3.8e-60 227.6
Cme06g00383 . 28 122 Primary Pumps ATPases(2) AT4G38920 98.9 5.4e-38 154.1
Cme06g00382 . 28 122 Primary Pumps ATPases(2) AT4G38920 98.9 5.4e-38 154.1
Cme03g01656 . 1 180 Primary Pumps ATPases(2) AT4G32530 73.8 1.9e-71 265.8
Cme04g00385 . 1 160 Primary Pumps ATPases(2) AT4G32530 73.7 8.7e-64 240.4
Cme12g00230 . 1 1065 Primary Pumps ATPases(2) AT1G07810 80.2 0.0e+00 1666.0
Cme12g00230 . 1 1065 Primary Pumps ATPases(2) AT1G07670 80.2 0.0e+00 1669.8
Cme12g00230 . 22 1046 Primary Pumps ATPases(2) AT4G00900 65.8 0.0e+00 1319.7
Cme02g00511 . 1 126 Primary Pumps ATPases(2) AT4G02620 84.9 1.3e-57 219.2
Cme01g01238 . 6 488 Primary Pumps ATPases(2) AT1G76030 96.1 4.3e-268 920.2
Cme04g02533 . 2 109 Primary Pumps ATPases(2) AT3G01390 79.6 3.6e-37 151.0
Cme09g01067 . 1 376 Primary Pumps ATPases(2) AT1G12840 83.0 5.3e-181 630.6
Cme05g00306 . 63 323 Primary Pumps ATPases(2) AT3G58730 81.6 8.4e-117 416.8
Cme04g02122 . 3 454 Primary Pumps ATPases(2) AT3G42050 79.9 1.3e-207 719.2
Cme03g01900 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 4.2e-74 274.2
Cme06g00383 . 3 122 Primary Pumps ATPases(2) AT2G16510 99.2 6.0e-52 200.7
Cme06g00382 . 3 122 Primary Pumps ATPases(2) AT2G16510 99.2 6.0e-52 200.7
Cme01g01238 . 1 488 Primary Pumps ATPases(2) AT4G38510 95.7 1.1e-269 925.6
Cme06g01749 . 1 176 Primary Pumps ATPases(2) AT1G64200 77.0 6.5e-66 247.3
Cme01g01238 . 9 488 Primary Pumps ATPases(2) AT1G20260 95.8 9.1e-266 912.5
Cme11g01758 . 73 886 Primary Pumps ATPases(2) AT2G28520 81.3 0.0e+00 1342.4
Cme01g01362 . 70 873 Primary Pumps ATPases(2) AT2G28520 63.2 1.6e-294 1008.8
Cme03g01909 . 2 519 Primary Pumps ATPases(2) AT2G28520 69.3 4.2e-215 745.0
Cme04g01965 . 1 351 Primary Pumps ATPases(2) AT3G28715 92.0 6.1e-192 666.8
Cme06g01749 . 1 229 Primary Pumps ATPases(2) AT4G11150 77.4 7.7e-90 327.0
Cme01g02735 . 1 623 Primary Pumps ATPases(2) AT1G78900 93.1 0.0e+00 1172.1
Cme01g01238 . 6 488 Primary Pumps ATPases(2) AT1G76030 96.1 4.3e-268 920.2
Cme01g01238 . 1 488 Primary Pumps ATPases(2) AT4G38510 95.7 1.1e-269 925.6
Cme01g01238 . 9 488 Primary Pumps ATPases(2) AT1G20260 95.8 9.1e-266 912.5
Cme09g01067 . 1 376 Primary Pumps ATPases(2) AT1G12840 83.0 5.3e-181 630.6
Cme05g00306 . 63 323 Primary Pumps ATPases(2) AT3G58730 81.6 8.4e-117 416.8
Cme06g01749 . 1 229 Primary Pumps ATPases(2) AT4G11150 77.4 7.7e-90 327.0
Cme06g01749 . 1 223 Primary Pumps ATPases(2) AT3G08560 69.5 6.5e-76 280.8
Cme06g01749 . 1 176 Primary Pumps ATPases(2) AT1G64200 77.0 6.5e-66 247.3
Cme02g00511 . 1 126 Primary Pumps ATPases(2) AT4G02620 84.9 1.3e-57 219.2
Cme04g02533 . 2 109 Primary Pumps ATPases(2) AT3G01390 79.6 3.6e-37 151.0
Cme04g02122 . 3 454 Primary Pumps ATPases(2) AT3G42050 79.9 1.3e-207 719.2
Cme11g01758 . 73 886 Primary Pumps ATPases(2) AT2G28520 81.3 0.0e+00 1342.4
Cme01g01362 . 70 873 Primary Pumps ATPases(2) AT2G28520 63.2 1.6e-294 1008.8
Cme03g01909 . 2 519 Primary Pumps ATPases(2) AT2G28520 69.3 4.2e-215 745.0
Cme01g01362 . 66 878 Primary Pumps ATPases(2) AT2G21410 75.8 0.0e+00 1234.2
Cme11g01758 . 81 890 Primary Pumps ATPases(2) AT2G21410 62.5 2.3e-298 1021.5
Cme03g01909 . 9 524 Primary Pumps ATPases(2) AT2G21410 76.9 1.2e-238 823.2
Cme01g01362 . 68 878 Primary Pumps ATPases(2) AT4G39080 77.1 0.0e+00 1240.3
Cme11g01758 . 81 890 Primary Pumps ATPases(2) AT4G39080 63.4 2.6e-297 1018.1
Cme03g01909 . 9 524 Primary Pumps ATPases(2) AT4G39080 77.8 1.6e-238 822.8
Cme03g01900 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 1.4e-60 229.2
Cme06g00383 . 28 122 Primary Pumps ATPases(2) AT4G34720 98.9 1.9e-38 155.6
Cme06g00382 . 28 122 Primary Pumps ATPases(2) AT4G34720 98.9 1.9e-38 155.6
Cme06g00383 . 1 122 Primary Pumps ATPases(2) AT1G19910 99.2 3.1e-53 204.5
Cme06g00382 . 1 122 Primary Pumps ATPases(2) AT1G19910 99.2 3.1e-53 204.5
Cme03g01900 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.2e-52 202.6
Cme03g01900 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 3.8e-60 227.6
Cme06g00383 . 28 122 Primary Pumps ATPases(2) AT4G38920 98.9 5.4e-38 154.1
Cme06g00382 . 28 122 Primary Pumps ATPases(2) AT4G38920 98.9 5.4e-38 154.1
Cme03g01900 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 1.4e-66 249.6
Cme06g00383 . 2 122 Primary Pumps ATPases(2) AT1G75630 96.7 5.2e-50 194.5
Cme06g00382 . 2 122 Primary Pumps ATPases(2) AT1G75630 96.7 5.2e-50 194.5
Cme03g01900 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 4.2e-74 274.2
Cme06g00383 . 3 122 Primary Pumps ATPases(2) AT2G16510 99.2 6.0e-52 200.7
Cme06g00382 . 3 122 Primary Pumps ATPases(2) AT2G16510 99.2 6.0e-52 200.7
Cme03g01656 . 1 180 Primary Pumps ATPases(2) AT4G32530 73.8 1.9e-71 265.8
Cme04g00385 . 1 160 Primary Pumps ATPases(2) AT4G32530 73.7 8.7e-64 240.4
Cme03g01656 . 4 180 Primary Pumps ATPases(2) AT2G25610 84.7 2.3e-70 262.3
Cme04g00385 . 7 160 Primary Pumps ATPases(2) AT2G25610 83.8 5.7e-61 231.1
Cme04g01965 . 1 351 Primary Pumps ATPases(2) AT3G28710 94.3 5.3e-199 690.3
Cme04g01965 . 1 351 Primary Pumps ATPases(2) AT3G28715 92.0 6.1e-192 666.8
Cme12g00230 . 1 1065 Primary Pumps ATPases(2) AT1G07810 80.2 0.0e+00 1666.0
Cme12g00230 . 22 1046 Primary Pumps ATPases(2) AT4G00900 65.8 0.0e+00 1319.7
Cme12g00230 . 1 1065 Primary Pumps ATPases(2) AT1G07670 80.2 0.0e+00 1669.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000455 4 5 5 3 4 3 5 3 3 3 3 3 6 3 3 5 3 6 6 3 3 3 3 3 3 3 3 7 4 4 115
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme01g01362 Cme_Chr01 FPKM 11.273652 11.122048 18.178686 18.229916 9.67468 8.828627 12.508642 49.276131 47.404263 50.25568