Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g01364 ATGAGCGTTGTGGGGTTTTCTTGTTCTTCTTTTGTTGTAGTTATTGCTGTTTTGGTTATGGTTTTGAATGGAGTGGAGGTGTGTTATGGAGGTAAAACAAGCCAGTTTCTGAGGAAGGTTGAGAAAACTGTGGATATGCCTCTTGACAGTGATGTTTTTGCTGTTCCTCCTGGTTTTAATGCTCCCCAGCAGGTTCATATCACACAAGGAGATCATGAAGGGAAGGCAGTGATTGTTTCATGGATCACTCCAGATAAACCAGGATCAAATGAAGTATTGTATTGGACTGAGAAAAGCAAGCAAAAGAAACTGGCCTTTGGAAAAGTATATACTTACAAGTTCTATAATTACACTTCTGGCTACATTCATCATTGTACCATTAAAAACTTAAAGTACAACACCAAATACTACTATGAAGTCGGAATTGGGTACTCTCCAAGAACATTCTGGTTTGTCACTCCTCCAGAAGTCGGTCCCGACGTTCCCTATACATTTGGTATCATAGGGGATCTTGGCCAGAGTTTTGATTCAAATGTAACGCTGACACACTACGAACGAAACCCGCATAACGGAAAAACAGTGTTGTTTGTTGGAGATCTCTCTTATGCTGACAACTATCCATTCCATGACAATGTAAGGTGGGATACATGGGGAAGATTCACAGAGAGAAGCACCGCCTATCAGCCTTGGATATGGACTGCAGGAAATCATGAAATTGATTTTGTCCCAGAAATTGGTGAGACCGAGCCTTTCAAGCCATTTACTAACCGATATCATGTCCCTTATAAAGCATCTGAGAGCACAGCTCCTTTTTGGTACTCAATCAAGAGAGGTCCAGCATACATCATAGTCTTGGCTTCATATTCAGCTTATGGTAAATACACTCCTCAATACGAATGGCTTGAAGCAGAGCTACCGAAAGTTAACAGAAATGAAACACCATGGTTACTTGTTCTTGTGCATTCCCCGTGGTACAACAGCTACAACTATCACTACATGGAAGGAGAAACTATGCGTGTGATGTATGAGTCATGGTTTGTACGATACAAAGTTGACGTCGTCTTTGCTGGCCATGTCCATGCTTATGAAAGATCTGAAAGAATTTCTAATATTGCATACAACATCGTGAATGGCCATTGTAATCCAGTGAAAGATCAATCTGCACCTGTATACATAACAATTGGTGATGGAGGAAACCTTGAAGGCCTAGCAACCAAGTAA 1221 41.03 MSVVGFSCSSFVVVIAVLVMVLNGVEVCYGGKTSQFLRKVEKTVDMPLDSDVFAVPPGFNAPQQVHITQGDHEGKAVIVSWITPDKPGSNEVLYWTEKSKQKKLAFGKVYTYKFYNYTSGYIHHCTIKNLKYNTKYYYEVGIGYSPRTFWFVTPPEVGPDVPYTFGIIGDLGQSFDSNVTLTHYERNPHNGKTVLFVGDLSYADNYPFHDNVRWDTWGRFTERSTAYQPWIWTAGNHEIDFVPEIGETEPFKPFTNRYHVPYKASESTAPFWYSIKRGPAYIIVLASYSAYGKYTPQYEWLEAELPKVNRNETPWLLVLVHSPWYNSYNYHYMEGETMRVMYESWFVRYKVDVVFAGHVHAYERSERISNIAYNIVNGHCNPVKDQSAPVYITIGDGGNLEGLATK 406
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17012690 17016059 + MELO3C013439.2.1 Cme01g01364 318340

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g01364 406 PANTHER PURPLE ACID PHOSPHATASE 9 405 - -
Cme01g01364 406 PANTHER ACID PHOSPHATASE RELATED 9 405 IPR039331 GO:0003993
Cme01g01364 406 Gene3D - 61 157 - -
Cme01g01364 406 SUPERFAMILY Purple acid phosphatase, N-terminal domain 43 155 IPR008963 GO:0003993|GO:0046872
Cme01g01364 406 Gene3D - 158 406 IPR029052 -
Cme01g01364 406 Pfam Purple acid Phosphatase, N-terminal domain 62 144 IPR015914 GO:0003993|GO:0046872
Cme01g01364 406 CDD MPP_PAPs 159 405 IPR041792 -
Cme01g01364 406 Pfam Calcineurin-like phosphoesterase 164 362 IPR004843 GO:0016787
Cme01g01364 406 SUPERFAMILY Metallo-dependent phosphatases 160 391 IPR029052 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g01364 K22390 ACP7; acid phosphatase type 7 - csv:101211612 825.083
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01364 Cme-Chr1:17012690 Cme08g00896 Cme-Chr8:5883744 0 dispersed
Cme01g01364 Cme-Chr1:17012690 Cme03g01915 Cme-Chr3:27264118 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g11 . . . . . . . . . . . . . . . Cpe04g00114 . . . . . . . . Cla02g00499 Cam02g0509 Cec02g0509 Cco02g0515 Clacu02g0511 Cmu02g0507 Cre02g0840 . . . . . . . Cme01g01364 Blo04g00527 . . Bda14g00570 . . Bma03g00564 . . . . . . . . . . . . . . . . . . . . . . . . Lsi11g01126 . Chy01g00759 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000712 2 3 4 4 1 3 4 3 3 3 3 3 3 3 3 3 3 5 4 3 4 3 3 3 3 3 3 4 3 5 97
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme01g01364 Cme_Chr01 FPKM 3.804294 3.461217 5.52408 5.280268 4.240468 5.732053 6.123782 2.144728 1.991339 1.513377