Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g01366 ATGGGAAAGAACAGAAGGCTTAAGGACGGCGCCGATAAGGGAGCCGCCGCCGGCGACCACTGCCCTTCCAAAGTCTTTGTCAAGAACTTGCCGTACTCCTTCACCAATTCACAGCTCGAAGAAACATTCAGTGATGTTGGACCGGTCCGGCGGTGCTTCATGGTTACCCAAAAGGGTTCAACCGAGCATCGTGGTTTTGGATTCGTGCAGTTTGCTGTAGCAGAAGATGCAAATCGAGCAATTCAGCTGAAAAATGGGCTTTCTTTTGAAGGACGCAAAATTACTGTCAAACATGCTATGCATCGAGCTCCCCTTGAGCAGCGGCGGTCGAAAGAAAATCAAGTTGCTGCATCTACGCTAGAAGCCAATGTGGAAGGAGATACTTCTGAAATGGAAGAACAACCGACTAACAAGGATAGAGGAACTTCTAAAAGGGATGAACAACCAATTGACAAGGAACGAGATACTTCTAAAAGGGCAGAACAAACAATTTCAAATTCTGAGGGGAAAGAGAGACATTTGAGTGCTCGAAAATTAGCTTCACTTTCTAGTTATCTAGAGGATAAAAAGGGTCATTCAGGAAAGCAAAGGATTGCACGGACTGTTGTCATTGGCGGTCTTCTTGATGGTGATATGGCTGAAGATGTTCACCGCCAAGTGAAAGATGCTGGTGGCGTATGCTCAATTGTCTATCCTCTTCCCAGAAAAGAAGTTGAACAACATGGTATTTTACGAGATGGATGCAAAATGGATGTTTCTGCCGTACTTTTTGATAGTGTGAAGTCTGCACGTGCTGCTGTTACTATATTACACCAGAAAGAGATGAAAGGAGGTGTTGTATGGGCCCGTCAACTGGGTGGGGAGGGGTCCAAAACTCAGAAATGGAAAGTTATTGTTAGAAATCTTCCATTTAAGGCCAAGGAGAAAGAAATAAAGAATACCTTTTCATCTGCGGGATTTGTGTGGGATGTGATGATGCCACAAAATTCAGACACTGGATTATCGAAGGGGTTCGCGTTTATCAAATTTACATGCAAGCAGGATGCTGAGAGTGCTATTCAAAAGTTCAATGGTAAAAAATTTGGTCAAAGGACGATAGCTGTGGACTGGGCTGTTCCAAAGAAGATATATAGTTCTGGTGGTGGTGCTAATGCTCCAGTTGATTCAGATGACGAGGATCAGACTGAAAGAGACAGAGAAAGTAGCATTAGTGGTGGTGATTTCGAAGATGAAAACACTGCTGGTCATCACGAATCTGAAAGTTCTTTAGAGGATTCGGAGAAAGAGGATATTTCCTCGGAGGTTGATTTTGAAGGAGAAGCAGAAATTGCAAGAAAAGTTCTTGAAACTCTAATTTCATCTTCGGCTAAAGAGGCTCTTCCTTCTCTCATTGATGGTAACCCAGCATCTAAAGTGAACAAGGATCCAGATTTTGATTCATCGAAGAAATCATCTGATATGTCTGATAAAGTATCAAATGAACATGGAAAGTTAAGTGAAAGCAAGACATCTATTCTTAAGCAAACAGATGAAGATGATTTGAAGAGAACGGTTTATATAGGCAATCTTCCTTTTGATATTGATAATGAAGAAGTGAAACAGCGGTTTTCTGGATTTGGTGAAGTATTATCCTTTGTGCCAGTTCTTCATCAAGTTACAAAGCGACCTAAAGGCACTGGTTTTCTCAAGTTTAAAACCACAGATGCTGCTAATGCTGCTGTTTCTTCTGCAAATGCTGCATCTGGTGTGGGAATATTTCTGAAAGGCAGACAACTGAAAGTATTGAATGCCTTGGATAAGAAATCAGCTCATGACAAGGAATTGGAGAAGTCAAAAAATGACAATCATGACCATCGGAATCTTTACCTCGCACAGGAAGGTCTTATTCTTGAGGGAACTCCAGCTGCTGAAGGAGTTTCTGCTAGCGACATGGAGAAACGTCAGAGACTGGAAAAGAAAAGAACAACCAAGCTTCAATCTCCAAATTTTCATGTTTCAAGGACTAGGCTCGTTATACATAATTTACCAAAATCAATGAAAGAAAAAGAACTTCACAAACTTTGCATTGAAGCTGTTACCTCTCGAGCTACAAAGCAAAAACCCGTCATTCGCCAGATTAAATTCTTAAAGGATGTTAAGAAAGGAAAGATGCTGACAAAAAATCACTCATGTGGAGTCGCTTTTGTCGAGTTTTCTGAGCATGAGCATGCCCTTGTAGCCTTGCGAGTTCTCAACAACAATCCAGAAACTTTTGGCCCTATAAATCGCCCAATCGTGGAGTTTGCTATTGACAACGTTCAAACATTGAAGCTGCGAAAAGCCAAGTTACAAGCTTGGTCGCAGGACAATAGTACCGCCAATGTTCCCAAAGCAAGGCTGAGAAATGATGGTTCTGATACAAAAGCTAGGGATGTCCATTCAAACAAGAACAATTCCAGAAAAAGGAAAGCAATAGATGATAATCATCTGGTGAAGGCACAGAATCATATCGAAGATGAAAATGACAATCATGTATCCAATGATGTGATGCAAGAAAGTAGAGCCAGAAAAAAGAGGAAAACACGTCCAGATATTGGAAATACAAACGAGTCACAGAAACAAAAACCAGAAGGACGAAGATTGATACCTCAAAAATCAAGCAAGAGACCGGCATCCATGGATTCTGAAAAAATAGAAGTTTCCCAGGAAGCTGATGCACAACAAAAAAAGAAGGTAAAACATCAAATAGAGCAGCAGCAGAGGAAGAGGCCAATGAAAAACAAGGAACCAATAGGACGGGATATTGTAGATAAACTCGACGTGCTTATCGAACAATATCAGTCCAAGTTTTTGCAGCAAAGGTCAGACCGAACGGATAGTGAAAAGAAAGGGTCTAAACAGGTTAGAAGATGGTTCCAATCATAA 2904 41.29 MGKNRRLKDGADKGAAAGDHCPSKVFVKNLPYSFTNSQLEETFSDVGPVRRCFMVTQKGSTEHRGFGFVQFAVAEDANRAIQLKNGLSFEGRKITVKHAMHRAPLEQRRSKENQVAASTLEANVEGDTSEMEEQPTNKDRGTSKRDEQPIDKERDTSKRAEQTISNSEGKERHLSARKLASLSSYLEDKKGHSGKQRIARTVVIGGLLDGDMAEDVHRQVKDAGGVCSIVYPLPRKEVEQHGILRDGCKMDVSAVLFDSVKSARAAVTILHQKEMKGGVVWARQLGGEGSKTQKWKVIVRNLPFKAKEKEIKNTFSSAGFVWDVMMPQNSDTGLSKGFAFIKFTCKQDAESAIQKFNGKKFGQRTIAVDWAVPKKIYSSGGGANAPVDSDDEDQTERDRESSISGGDFEDENTAGHHESESSLEDSEKEDISSEVDFEGEAEIARKVLETLISSSAKEALPSLIDGNPASKVNKDPDFDSSKKSSDMSDKVSNEHGKLSESKTSILKQTDEDDLKRTVYIGNLPFDIDNEEVKQRFSGFGEVLSFVPVLHQVTKRPKGTGFLKFKTTDAANAAVSSANAASGVGIFLKGRQLKVLNALDKKSAHDKELEKSKNDNHDHRNLYLAQEGLILEGTPAAEGVSASDMEKRQRLEKKRTTKLQSPNFHVSRTRLVIHNLPKSMKEKELHKLCIEAVTSRATKQKPVIRQIKFLKDVKKGKMLTKNHSCGVAFVEFSEHEHALVALRVLNNNPETFGPINRPIVEFAIDNVQTLKLRKAKLQAWSQDNSTANVPKARLRNDGSDTKARDVHSNKNNSRKRKAIDDNHLVKAQNHIEDENDNHVSNDVMQESRARKKRKTRPDIGNTNESQKQKPEGRRLIPQKSSKRPASMDSEKIEVSQEADAQQKKKVKHQIEQQQRKRPMKNKEPIGRDIVDKLDVLIEQYQSKFLQQRSDRTDSEKKGSKQVRRWFQS 967
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17028692 17044779 - MELO3C013443.2.1 Cme01g01366 318342

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g01366 967 SUPERFAMILY RNA-binding domain, RBD 516 746 IPR035979 GO:0003676
Cme01g01366 967 SUPERFAMILY RNA-binding domain, RBD 291 383 IPR035979 GO:0003676
Cme01g01366 967 MobiDBLite consensus disorder prediction 379 435 - -
Cme01g01366 967 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 516 599 IPR000504 GO:0003723
Cme01g01366 967 PANTHER RNA-BINDING MOTIF PROTEIN, Y CHROMOSOME, FAMILY 1 MEMBER C-RELATED 9 391 - -
Cme01g01366 967 PANTHER RNA-BINDING MOTIF PROTEIN, Y CHROMOSOME, FAMILY 1 MEMBER C-RELATED 505 780 - -
Cme01g01366 967 MobiDBLite consensus disorder prediction 947 961 - -
Cme01g01366 967 MobiDBLite consensus disorder prediction 866 926 - -
Cme01g01366 967 MobiDBLite consensus disorder prediction 794 859 - -
Cme01g01366 967 Gene3D - 465 613 IPR012677 -
Cme01g01366 967 Gene3D - 2 115 IPR012677 -
Cme01g01366 967 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 23 101 IPR000504 GO:0003723
Cme01g01366 967 MobiDBLite consensus disorder prediction 121 176 - -
Cme01g01366 967 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 25 94 IPR000504 GO:0003723
Cme01g01366 967 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 518 578 IPR000504 GO:0003723
Cme01g01366 967 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 297 366 IPR000504 GO:0003723
Cme01g01366 967 MobiDBLite consensus disorder prediction 462 505 - -
Cme01g01366 967 MobiDBLite consensus disorder prediction 944 967 - -
Cme01g01366 967 SUPERFAMILY RNA-binding domain, RBD 23 281 IPR035979 GO:0003676
Cme01g01366 967 MobiDBLite consensus disorder prediction 390 428 - -
Cme01g01366 967 Gene3D - 667 762 IPR012677 -
Cme01g01366 967 SMART rrm2_1 24 97 IPR003954 GO:0003676
Cme01g01366 967 SMART rrm2_1 296 369 IPR003954 GO:0003676
Cme01g01366 967 MobiDBLite consensus disorder prediction 131 176 - -
Cme01g01366 967 Gene3D - 282 408 IPR012677 -
Cme01g01366 967 PANTHER RNA BINDING PROTEIN 9 391 - -
Cme01g01366 967 PANTHER RNA BINDING PROTEIN 505 780 - -
Cme01g01366 967 MobiDBLite consensus disorder prediction 778 926 - -
Cme01g01366 967 CDD RRM2_RBM28_like 296 372 - -
Cme01g01366 967 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 668 776 IPR000504 GO:0003723
Cme01g01366 967 MobiDBLite consensus disorder prediction 475 505 - -
Cme01g01366 967 CDD RRM4_RBM28_like 668 765 - -
Cme01g01366 967 CDD RRM1_RBM28_like 25 102 - -
Cme01g01366 967 SMART rrm1_1 517 595 IPR000504 GO:0003723
Cme01g01366 967 SMART rrm1_1 296 369 IPR000504 GO:0003723
Cme01g01366 967 SMART rrm1_1 669 760 IPR000504 GO:0003723
Cme01g01366 967 SMART rrm1_1 24 97 IPR000504 GO:0003723
Cme01g01366 967 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 295 373 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g01366 K14573 NOP4, RBM28; nucleolar protein 4 - csv:101217384 1722.6
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01366 Cme-Chr1:17028692 Cme06g00680 Cme-Chr6:4394164 1.48E-08 dispersed
Cme01g01366 Cme-Chr1:17028692 Cme12g01943 Cme-Chr12:25368665 3.14E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g6 . . . Bda08g00947 . . Bma05g00433 . . . . . . . . . Cpe15g00552 . . . . . . . . . . . . . . . . Cone3ag1223 Cone10ag1108 . Csa07g00016 . Cme01g01366 . . . . . Bpe05g00327 . . . . . . . . Car19g00524 . . . . . . . . . . . . . . . . Lsi11g01124 . Chy01g00761 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009278 1 1 1 3 1 1 1 1 1 1 1 1 0 1 2 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme01g01366 Cme_Chr01 FPKM 0.0 0.0 0.0 0.0 0.955325 1.262443 0.0 0.0 0.0 0.0