Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g01368 ATGGGATCTGTGTGTTGTGTTGCGGCAAGAGACAAGACTGTTGGGGTTGGATCTGGTAGTGAAACGCAGCATAGGAATATTCGTCACTCGCCGAGTTGGAGCTTTCGGTGGGATCATCCTGGGCGTGTGATTGGTGAGGAAGTTTCCCTGAATTCGATTTCAGATGGAGTAAGTAGAAATGATAGGCCAGAGTTCAAATATGAGTCCTCATATGCTTCAGAAGAGGGTAGTCCATTGGAACATTATCGTAGACAGACATGGAAAAACTCCTCAGTTTCTGAAGGAAGCACGACGAATGTGAGGACTCCTACATCAGGTCGTTCAATTTCAAGAAATGTTTCCACGGATGTTAGTTTGGAACAGGTGAAGAAAGCCACAGAAAATGCAACAGCTTCTACATCTCCTGCAAAAGTATCCCTTTCAATCCCTTCAACTTCATCTTTGTCAACATCCCCTCTATCAACCCACAGTCACATTCCTTCCACCGGTCTGACCACATCGAGATTGTCTCACTGTTCTCCCGGGCATCGATTGTTACGTCAAGTATCTGGTAACCGCATCCCAGCATACAAGTCACCAAGTAGCTACACAGTTTCAGAGGACAGGCGTGCAATCCCTGGGAGCAATGATTCATTACGGGGATCGCATGGTGGGTCTTCTGATGGTTGGTCTATGAATGCTTTCTCTGAGCTCATGGCAACTTCTCATAGGGGAAGATGGTCCTTTGGCAGTGAATCCTTTGACTTTGCTCGTGAGAAGATGGTTAGATCCTGCAGCCTATTCTCCACTTCACCTTCTGCTGATTCGCAAACTTGCGGAATTTGCTCAATGTTGTTGGTTGAGAGATCTTTATGGACCAGCCAAAAGATAATTGCTAACAATGAACTGTCTGTTGTTGCTGTACTAACATGTGGACATGTTTATCATGCTGAGTGTTTGGAGAGTATGACACCTGAAATTAGCAAGTATGATCCAGCCTGCCCAATATGTTCATTTGGTGAAAAGCAGACACTAAGGATGTCTGAAAAGGCACTTAGAGGTGAATTAGAGTCGAAAATTAGAAATAAGAGGTTAAGGAATCGCATTGCTGATAGCGGTCTTGATAGCGAATCTGCCATGCTTGATCATTTTATAAATACTGGACAACAAGGGAAGTGTCCTAAGTTGTCTTCTAGCTCCAGTTTGAGAGGTTCTTCAGGGAGGGGTTTCTTGAGGCGTCACTTCTCCTTTGGCTCAAAGGGAGGGACTAAAGCCCTACCAGAAAGTAACAACACGGCGAAGAGAAAAGGATTTTTATGGTCAAGATCTACTAAGATGTGA 1320 44.62 MGSVCCVAARDKTVGVGSGSETQHRNIRHSPSWSFRWDHPGRVIGEEVSLNSISDGVSRNDRPEFKYESSYASEEGSPLEHYRRQTWKNSSVSEGSTTNVRTPTSGRSISRNVSTDVSLEQVKKATENATASTSPAKVSLSIPSTSSLSTSPLSTHSHIPSTGLTTSRLSHCSPGHRLLRQVSGNRIPAYKSPSSYTVSEDRRAIPGSNDSLRGSHGGSSDGWSMNAFSELMATSHRGRWSFGSESFDFAREKMVRSCSLFSTSPSADSQTCGICSMLLVERSLWTSQKIIANNELSVVAVLTCGHVYHAECLESMTPEISKYDPACPICSFGEKQTLRMSEKALRGELESKIRNKRLRNRIADSGLDSESAMLDHFINTGQQGKCPKLSSSSSLRGSSGRGFLRRHFSFGSKGGTKALPESNNTAKRKGFLWSRSTKM 439
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17058700 17063097 - MELO3C013445.2.1 Cme01g01368 318344

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g01368 439 MobiDBLite consensus disorder prediction 189 204 - -
Cme01g01368 439 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 251 332 IPR013083 -
Cme01g01368 439 SMART ring_2 272 330 IPR001841 -
Cme01g01368 439 MobiDBLite consensus disorder prediction 83 172 - -
Cme01g01368 439 PANTHER EXPRESSED PROTEIN 1 431 - -
Cme01g01368 439 SUPERFAMILY RING/U-box 267 332 - -
Cme01g01368 439 PANTHER BNAA09G43140D PROTEIN 1 431 - -
Cme01g01368 439 MobiDBLite consensus disorder prediction 68 172 - -
Cme01g01368 439 MobiDBLite consensus disorder prediction 416 439 - -
Cme01g01368 439 MobiDBLite consensus disorder prediction 414 439 - -
Cme01g01368 439 MobiDBLite consensus disorder prediction 189 219 - -
Cme01g01368 439 ProSiteProfiles Zinc finger RING-type profile. 272 331 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g01368 - - - csv:101210626 821.231
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01368 Cme-Chr1:17058700 Cme02g01130 Cme-Chr2:16340082 2.78E-12 dispersed
Cme01g02533 Cme-Chr1:33294657 Cme01g01368 Cme-Chr1:17058700 1.06E-06 transposed
Cme10g00402 Cme-Chr10:2565283 Cme01g01368 Cme-Chr1:17058700 3.39E-20 transposed
Cme01g01368 Cme-Chr1:17058700 Cme11g00139 Cme-Chr11:1426924 1.72E-169 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g1 . . . . Bpe07g00526 . . . . . Cma02g00375 Cma20g00824 Car02g00242 Car20g00710 . Cpe04g00116 . . . . . . . . Cla02g00501 Cam02g0511 Cec02g0511 Cco02g0519 Clacu02g0513 Cmu02g0509 Cre02g0842 . . . . . . . Cme01g01368 . . . . . . . . Sed01g0278 Cmo02g00382 Cmo20g00835 . . . . . . Bhi10g01967 Tan05g1260 Cmetu11g0821 . . . . . . . . . . . . . Chy01g00763 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001394 4 6 2 3 3 2 3 2 2 2 2 2 2 2 2 1 2 2 3 2 2 2 2 2 2 2 2 5 5 1 74
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme01g01368 Cme_Chr01 FPKM 135.122162 150.337524 0.769351 0.448601 0.847642 0.0 0.0 0.0 0.0 0.0