Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g01389 ATGGTGGATTTGCAGGTGACGGTGGAAGAAGATGAGAACAACAGCAAGGAGAAGAGGATCAAAACAAGTTCAGAAGGAGAATTATCCAAAACTACAGATCAAAACGGCACCAAAAACAACTCAACCATCACAACCACAACAAACAACAACAGAGAAACTTCAGCTGATACATCAAAAGAAAACTCTAAAGCTTCAGAAGTTCAAAAGCCTGATTACATTCATGTCAGAGCTCGTCGTGGCCAAGCCACTGATAGCCATAGCTTAGCTGAAAGAGCTAGAAGGGAAAAAATCAGTGAGAGAATGAAGTACTTGCAAGATTTAGTACCAGGATGCAATAAAATCACTGGAAAAGCTGGAATGCTGGATGAGATCATAAACTATGTTCAATCTCTTCAAAGACAAGTTGAGTTAGCTGCAGTTAATCCAAGGTTGGACTTCAATGTCGACGATCTCTTCAACAAAGAGGTTTTCCCTCCATCTTGCACCGCAGCAAATTTCCCGGCAATCGGCGGAATGTCATCGGAAATGACAGATCCTTCTTCTTACTTGCAATTCAATCCAAATAATCAACAAATGGACTCGTGTTGTGGGTTAGAAATGGGAATCAATACCTCCCATGTCGCTCTTCGAAGAACAATCAGCGCCCCTGTTTCTTTCCCCGAAAATTTCCTCGATTCATCTTGCCTCACGTTCCGATCGTTTAGAGTTCCTAATAACTACAAATCAATCAATAAATCAATGCAGCAATTTCAACCCTCTTCAGGGTGGGATGTGGATTTGCAGAATATGTACAATGTGGGTTTCGATCAAGGAAGGTCATCAAACGCCTTCTCATCTCAACCATACACAGGTTCAATTGAAGCAGGCAATATAAAGATGGAAATGTGA 888 41.33 MVDLQVTVEEDENNSKEKRIKTSSEGELSKTTDQNGTKNNSTITTTTNNNRETSADTSKENSKASEVQKPDYIHVRARRGQATDSHSLAERARREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVELAAVNPRLDFNVDDLFNKEVFPPSCTAANFPAIGGMSSEMTDPSSYLQFNPNNQQMDSCCGLEMGINTSHVALRRTISAPVSFPENFLDSSCLTFRSFRVPNNYKSINKSMQQFQPSSGWDVDLQNMYNVGFDQGRSSNAFSSQPYTGSIEAGNIKMEM 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17299178 17301622 - MELO3C013453.2.1 Cme01g01389 318365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g01389 295 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 79 137 IPR036638 GO:0046983
Cme01g01389 295 MobiDBLite consensus disorder prediction 1 68 - -
Cme01g01389 295 Pfam Helix-loop-helix DNA-binding domain 85 132 IPR011598 GO:0046983
Cme01g01389 295 SMART finulus 87 137 IPR011598 GO:0046983
Cme01g01389 295 PANTHER TRANSCRIPTION FACTOR BHLH63-LIKE 8 275 - -
Cme01g01389 295 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 81 131 IPR011598 GO:0046983
Cme01g01389 295 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 8 275 IPR024097 GO:0006355
Cme01g01389 295 Gene3D - 78 149 IPR036638 GO:0046983
Cme01g01389 295 CDD bHLH_AtBPE_like 71 151 - -
Cme01g01389 295 MobiDBLite consensus disorder prediction 27 55 - -
Cme01g01389 295 MobiDBLite consensus disorder prediction 9 26 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01389 Cme-Chr1:17299178 Cme06g00870 Cme-Chr6:5978443 2.63E-46 dispersed
Cme08g01745 Cme-Chr8:20005185 Cme01g01389 Cme-Chr1:17299178 4.07E-06 transposed
Cme01g01389 Cme-Chr1:17299178 Cme11g00114 Cme-Chr11:1054206 4.37E-47 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40752 PF00010 HLH 6.80E-07 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g01389 - - cmo:103490373 507.679