Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g01426 ATGATTGCGGCTTCTGGTTTAATCTTCTTATGTGTCCGTAGAAGTAGGGAATCGAGGAAGCACAAAATGCGGGTGAAACATAGTTCTGGGTTGATTCCATTGGTTTCCAAGGAGATCGCTGAGATTAAAGAGTCCGATCGGACTGTGGAGGATTGCGAGAAAGGGGAAGTTATTAGGGTTGAGAAAAAAAAGGAGATTGAGTTCGAGAATGGTGTAAGTAAGAAGAGTCAAGAAAGCGACGTGTCCGGAGGTGGTCGGAGCGATGTGTCGGTGGAGGATCCGAACTTAGGGTGGGGACGGTGGTATAGCTTGAAGGAACTAGAAATGGCGACTGATGGGTTTGTGGAAGAGAATGTGATCGGAGAAGGAGGCTACGGCATCGTGTACAGAGGAGTTTTGCCGGACGGTTCCGTCGTCGCCGTGAAGAATCTTCTTAATAATAAAGGTCAGGCAGAGAAAGAGTTCAAGGTTGAAGTAGAGGCCATTGGAAAAGTAAGGCACAAGAACTTGGTGGGTCTGATAGGTTATTGCGCAGAAGGAGCTCAGAGGATGCTTGTGTATGAATTTGTTGATAATGGCAACTTGGAGCAATGGTTACATGGTGATGTAGGGCCTGTTAGCCCTTTAACATGGGAGATTAGGATGAAGATTGCACTTGGAACAGCAAAAGGTTTGGCCTATTTGCACGAGGGTTTAGAACCAAAAGTTGTGCACCGTGATGTGAAGTCCAGCAACATTCTCTTAGACAGAAAATGGAATGCAAAAGTGTCTGATTTTGGACTTGCAAAGCTCTTACAACCTGAAGCCAGCTACGTAACTACTCGTGTAATGGGTACCTTTGGATATGTATCCCCAGAGTATGCAAGCACAGGCATGCTTAATGAGGGAAGTGATGTATATAGTTTCGGTGTTCTACTTATGGAGATCATTACTGGCAGAAGCCCAATTGACTATTCCCGGCCCCCAGGAGAGATGAACTTGGTGGACTGGTTTAAAGGGATGGTGGCAAATAGACGTGGTGAAGAGGTAGTAGATCCATTGATTGAGATTCCACCCTCTCCTAGAACTCTAAAGAGAGTGTTGCTTGTTTGTCTACGCTGCATTGATTTGGATGCCAATAAAAGGCCAAAGATGGGGCAAATCGTTCATATGCTAGAGGCAGATGATTTTCCTTATCGTTCAGAGCTTCGATCTGTGCGAGAGAAAGATAGCCAGCCTGCTCGTTCAGATGTGCCGAGTAAACTTCCACTATAG 1254 45.69 MIAASGLIFLCVRRSRESRKHKMRVKHSSGLIPLVSKEIAEIKESDRTVEDCEKGEVIRVEKKKEIEFENGVSKKSQESDVSGGGRSDVSVEDPNLGWGRWYSLKELEMATDGFVEENVIGEGGYGIVYRGVLPDGSVVAVKNLLNNKGQAEKEFKVEVEAIGKVRHKNLVGLIGYCAEGAQRMLVYEFVDNGNLEQWLHGDVGPVSPLTWEIRMKIALGTAKGLAYLHEGLEPKVVHRDVKSSNILLDRKWNAKVSDFGLAKLLQPEASYVTTRVMGTFGYVSPEYASTGMLNEGSDVYSFGVLLMEIITGRSPIDYSRPPGEMNLVDWFKGMVANRRGEEVVDPLIEIPPSPRTLKRVLLVCLRCIDLDANKRPKMGQIVHMLEADDFPYRSELRSVREKDSQPARSDVPSKLPL 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18142257 18146922 + MELO3C012525.2.1 Cme01g01426 318402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g01426 417 Gene3D Phosphorylase Kinase; domain 1 88 189 - -
Cme01g01426 417 ProSitePatterns Protein kinases ATP-binding region signature. 120 142 IPR017441 GO:0005524
Cme01g01426 417 MobiDBLite consensus disorder prediction 71 90 - -
Cme01g01426 417 ProSiteProfiles Protein kinase domain profile. 114 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme01g01426 417 ProSitePatterns Serine/Threonine protein kinases active-site signature. 236 248 IPR008271 GO:0004672|GO:0006468
Cme01g01426 417 MobiDBLite consensus disorder prediction 397 417 - -
Cme01g01426 417 PANTHER OS01G0323000 PROTEIN 3 402 - -
Cme01g01426 417 Gene3D Transferase(Phosphotransferase) domain 1 190 402 - -
Cme01g01426 417 CDD STKc_IRAK 120 386 - -
Cme01g01426 417 SMART serkin_6 114 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme01g01426 417 PANTHER OS03G0227900 PROTEIN 3 402 - -
Cme01g01426 417 SUPERFAMILY Protein kinase-like (PK-like) 90 386 IPR011009 -
Cme01g01426 417 Pfam Protein tyrosine and serine/threonine kinase 117 385 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01426 Cme-Chr1:18142257 Cme08g00582 Cme-Chr8:3680046 1.30E-169 dispersed
Cme01g01426 Cme-Chr1:18142257 Cme03g02062 Cme-Chr3:28105142 6.83E-176 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64613 PF07714 PK_Tyr_Ser-Thr 8.70E-46 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g01426 - - csv:101219201 799.275