Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g01427 ATGGAGGAGAAATTGATTCAACGTCTTGAATCCGCCGTGTGCCGTCTCGAAGCACTCTCTCCAGCTGGTTTCTCCACTCGCGGTATTTCGTTGTCAAATGACGACAATGCGGCGTCGGAACCTCCGATTTTGGCTTTTGAGGATCTGATGAGGAATTACGTTCGGAAAGTGTCCGATGCTGCTGAGAAGATTGGAGGTCCAGTCCTCGAGGCCACGAGGATTGTGGAAGAAGCTTTTTCTGTTGAGAAGCAGCTTCTTGTTGATGTCAAACAAACTCAGAAACCAGATCTTGCGGGGTTGGCTGGATTTCTCAAGCCACTGAACGAAGTGATTTTGAAGGCAAACACATTGACAGCAGGGAAAAGATCTGAGTTCTTTAATCATCTAAAGACTGTCGCTGATGCTCTCTCGGCTTTAGCCTGGATTGCGTATACGGGAAAAGAGTGTGGTATGAGCATGCCCATAGCACATGTTGAGGAAAGTTGGCAAACGGCTGAGTTTTACAGCAACAAGATTCTCGTGGAGTTTAAAAGCAAAGATCAAAACCATGTTGAGTGGGCCAAAGCTATGAAGGAGCTATTCTTGACAGGTTTGAGGGATTATGTTAAAAGTTTCTATCCTTTGGGACCAGTTTGGAATCCTGCTGGCAAAATGACTCCAGCAACTTCTACAAAAGTACCTGCCCCAAGTGCTTCTGCTCCTCCACCTCCCTCAGCTCCCCTCTTTAACACTGAAACTTCTCAAGCTTCGGCACGACCAAAAGAGGGAATGGCTGCTGTGTTTCAAGAAATTAGCTCAGGAAAGTCTGTAACCGGAGGTCTGAGAAAAGTAACTGATGACATGAAGACGAAAAACCGAGCAGAGAGAACTGGTATTGTCAATACCAATGAAATTGGTCATAGAAATTCACCTTCTGTGTCGAAGCCAGTTGTTGCCCCCAACCCCAAGTTCGAGCTTCAAATGGGTCGGAAGTGGGCCATTGAGCACCAAATTGGAAAAAAAGACTTGGTTATATCAGACTGTGATTCAAAACAGTCGGATGTTGTGGCTGCTTGTGAGGTTGTAAACTGCAATGGTATTGAGATTCAATGTCAGGGATCAGCTCCAACTATTTCTGTGGATAACACCGGCGGATGTCAATTGTATTTAAGCAACGATTCTCTGAAGGCGTCTATAACGACCGCTAAATCAAGTGAAATCAATGTTTTGGTGCGAGGAAGTGATCCTGATGGTGATTGGAAAACAATTGTTGATCTTGAACATTGA 1266 45.1 MEEKLIQRLESAVCRLEALSPAGFSTRGISLSNDDNAASEPPILAFEDLMRNYVRKVSDAAEKIGGPVLEATRIVEEAFSVEKQLLVDVKQTQKPDLAGLAGFLKPLNEVILKANTLTAGKRSEFFNHLKTVADALSALAWIAYTGKECGMSMPIAHVEESWQTAEFYSNKILVEFKSKDQNHVEWAKAMKELFLTGLRDYVKSFYPLGPVWNPAGKMTPATSTKVPAPSASAPPPPSAPLFNTETSQASARPKEGMAAVFQEISSGKSVTGGLRKVTDDMKTKNRAERTGIVNTNEIGHRNSPSVSKPVVAPNPKFELQMGRKWAIEHQIGKKDLVISDCDSKQSDVVAACEVVNCNGIEIQCQGSAPTISVDNTGGCQLYLSNDSLKASITTAKSSEINVLVRGSDPDGDWKTIVDLEH 421
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18158366 18161737 + MELO3C012526.2.1 Cme01g01427 318403

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g01427 421 ProSiteProfiles C-CAP/cofactor C-like domain profile. 283 419 IPR017901 -
Cme01g01427 421 SUPERFAMILY C-terminal domain of adenylylcyclase associated protein 315 414 IPR036223 -
Cme01g01427 421 ProSitePatterns CAP protein signature 1. 5 17 IPR018106 -
Cme01g01427 421 PANTHER ADENYLYL CYCLASE-ASSOCIATED PROTEIN 347 414 - -
Cme01g01427 421 MobiDBLite consensus disorder prediction 219 243 - -
Cme01g01427 421 Gene3D - 43 217 IPR036222 -
Cme01g01427 421 SUPERFAMILY N-terminal domain of adenylylcyclase associated protein, CAP 43 237 IPR036222 -
Cme01g01427 421 Pfam Adenylate cyclase associated (CAP) C terminal 347 414 IPR013912 GO:0003779|GO:0007010
Cme01g01427 421 Gene3D - 346 421 IPR016098 -
Cme01g01427 421 PANTHER ADENYLYL CYCLASE-ASSOCIATED PROTEIN 1 347 - -
Cme01g01427 421 SMART carp 357 394 IPR006599 -
Cme01g01427 421 PANTHER ADENYLYL CYCLASE-ASSOCIATED PROTEIN 1 347 IPR001837 GO:0003779|GO:0007010
Cme01g01427 421 PANTHER ADENYLYL CYCLASE-ASSOCIATED PROTEIN 347 414 IPR001837 GO:0003779|GO:0007010
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g01427 K17261 CAP1_2, SRV2; adenylyl cyclase-associated protein - csv:101218960 744.191
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01427 Cme-Chr1:18158366 Cme11g00191 Cme-Chr11:2308593 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g586 Blo02g00802 . . Bda08g00928 . . Bma05g00467 . Cmo19g00676 . Cma02g00403 . Car02g00263 Car20g00737 Sed04g3936 . Cpe15g00536 Bhi05g01226 Tan02g0805 Cmetu01g2256 . Hepe02g0512 . . Cla02g00526 Cam02g0544 Cec02g0545 Cco02g0551 Clacu02g0545 Cmu02g0540 Cre02g0871 . . Cone3ag1160 Cone10ag1168 Lsi10g00362 . Chy11g00386 Cme01g01427 . . . . . . . . Sed01g0307 Cmo02g00408 Cmo20g00863 . Cma19g00662 . Car19g00505 . Cpe05g01254 Bhi10g02018 Tan05g1316 Cmetu11g1598 . Hepe08g1021 . . . . . . . . . Lsi11g01099 Csa02g01251 Chy01g00792 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002540 1 2 1 2 1 2 3 2 2 2 1 2 2 2 2 3 2 2 3 2 2 2 2 2 2 2 2 3 2 1 59
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme01g01427 Cme_Chr01 FPKM 0.0 0.0 0.308477 0.0 5.242862 5.314331 3.964241 0.0 0.230625 0.0