Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g01430 ATGCCTTCCCGCAGAAGGACCCTCTTGAAGGTCATCATCCTTGGGGATAGCGGGGTGGGGAAGACCTCTTTGATGAATCAATATGTGAATAAGAAGTTTAGTAATCAATACAAGGCCACCATTGGAGCTGATTTCTTGACTAAGGAAGTACAATTTGAAGATAGACTTTTCACTTTGCAGATATGGGATACAGCAGGCCAGGAACGATTTCAAAGTCTTGGTGTTGCTTTTTATCGAGGTGCTGATTGCTGCGTTCTGGTGTATGATGTCAATTCAATGAAATCATTTGACAATCTTAACAACTGGCGGGAAGAATTCCTTATCCAGGCAAGCCCTTCCGATCCGGAAAATTTTCCTTTTGTCGTTTTAGGAAATAAAGTTGATGTTGATGGCGGAAACAGTAGAGTTGTTTCAGAGAAAAAGGCTCGAGCTTGGTGTGCATCAAAAGGAAATATCCCGTACTTTGAAACTTCTGCCAAAGAAGGCATTAACGTAGAAGAGGCATTCCAATGCATTGCAAAAAATGCCCTCAAGAGTGGGGAAGAGGAAGAGATATACTTACCGGACACCATTGATGTTGGGAGCAACAATCAGCCAAGATCATCTGGATGTGACTGCTGA 621 42.67 MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKVDVDGGNSRVVSEKKARAWCASKGNIPYFETSAKEGINVEEAFQCIAKNALKSGEEEEIYLPDTIDVGSNNQPRSSGCDC 206
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18206048 18209194 + MELO3C012529.2.1 Cme01g01430 318406

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g01430 206 ProSiteProfiles small GTPase Ras family profile. 3 206 IPR001806 GO:0003924|GO:0005525
Cme01g01430 206 SMART rab_sub_5 9 179 - -
Cme01g01430 206 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 5 181 IPR027417 -
Cme01g01430 206 CDD Rab7 9 182 - -
Cme01g01430 206 ProSiteProfiles small GTPase Rab1 family profile. 3 206 - -
Cme01g01430 206 TIGRFAM small_GTP: small GTP-binding protein domain 9 172 IPR005225 GO:0005525
Cme01g01430 206 SMART ran_sub_2 14 206 - -
Cme01g01430 206 ProSiteProfiles small GTPase Rho family profile. 2 180 - -
Cme01g01430 206 SMART rho_sub_3 11 179 IPR001806 GO:0003924|GO:0005525
Cme01g01430 206 PANTHER RAS-RELATED PROTEIN RABG3F 1 206 - -
Cme01g01430 206 PRINTS Transforming protein P21 ras signature 9 30 - -
Cme01g01430 206 PRINTS Transforming protein P21 ras signature 32 48 - -
Cme01g01430 206 PRINTS Transforming protein P21 ras signature 50 72 - -
Cme01g01430 206 PRINTS Transforming protein P21 ras signature 116 129 - -
Cme01g01430 206 PRINTS Transforming protein P21 ras signature 154 176 - -
Cme01g01430 206 PANTHER RAB FAMILY 1 206 - -
Cme01g01430 206 Gene3D - 2 189 IPR027417 -
Cme01g01430 206 Pfam Ras family 10 177 IPR001806 GO:0003924|GO:0005525
Cme01g01430 206 SMART ras_sub_4 6 179 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g01430 K07897 RAB7A; Ras-related protein Rab-7A - csv:101218255 421.779
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme01g01430 Cme11g00207 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01430 Cme-Chr1:18206048 Cme01g02694 Cme-Chr1:34316563 2.05E-121 dispersed
Cme11g00209 Cme-Chr11:2486173 Cme01g01430 Cme-Chr1:18206048 1.53E-14 dispersed
Cme01g01430 Cme-Chr1:18206048 Cme08g02378 Cme-Chr8:30664281 1.42E-39 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g580 . . . . . Bpe12g00077 . . Cmo19g00673 . . . . . . . Cpe15g00533 Bhi05g01223 Tan02g0809 . . Hepe02g0515 . . Cla02g00529 Cam02g0547 Cec02g0548 Cco02g0554 Clacu02g0548 Cmu02g0543 Cre02g0874 Cone12ag1146 Cone8ag1194 Cone3ag1157 Cone10ag1166 Lsi10g00673 . . Cme01g01430 Blo04g00507 Blo13g00556 Bda15g00017 Bda14g00548 . . . . . . . . Cma19g00659 . Car19g00502 . Cpe01g00429 . . . . . . . . . . . . . . Lsi11g01095 . Chy01g00795 Cme11g00207
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001330 4 2 4 2 2 2 4 2 2 2 2 2 4 2 2 4 2 4 2 2 2 3 2 1 2 1 2 4 3 2 74
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme01g01430 Cme_Chr01 FPKM 46.075981 52.4981 16.002964 16.541531 10.472631 8.584676 8.868856 21.667562 23.952137 25.532293