Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g01469 ATGAAGCATTTGAAACATGGGTTACTGTGCCATGTCCAAGGCATCAAATCCGGATTTACACCCACCATTTTCACGTCGAACCAACTCATTAACTTCTATGCGAAACATGGTCTTCTTAACGATGCCCAGAAATTGTTTGACGAAATGCCTGAACGAAATGTTTTCTCCTGGAATGCTATAATATCGGCGTATATTAAGTCTCAGAACTTGAGAACAGCTCGGGCATTATTTGACTCCGCTGTCTATAAAGATTTGGTTACTTACAACTCTATGTTGTCTGGTTATGCTCGCTCTGATGGGTATGAGGGTAAAGCACTTGGGTTTTTTATGGAAATGCAAACGGCTCCTGATATGATTAGAATTGATGAGTTCAGTCTCATAATCATGCTTAATTTAACTGCTAAGTTGTGTGTGATTTCTTATGGAAAGCAGTTGCATTCCTTCATGTTGAAGACTGCTAATGACTTAAGTGTGTTTGCTGCTAGTTCCCTGATTGATATGTACTCTAAGTGTGGGTTTTTTAAAGAAGCATGTAGAGTTTATTATGGATGTGGTGAGGTGGTTGATTCGGTTTCTAGAAATGCCATGGTTGCAGCTTGTTGTAGAGAAGGGGAGATAGATGTGGCTTTGGATCTTTTCTGGAAGGAATTGGAGCAAAATGATGTTGTAGCATGGAACACGATGATTTCCGGTTTTGTTCAGAATGGTTATGAGGAAGAGTCATTGAAATTATTCGTTCGTATGGCGGATGAAAAGGTTGGGTGGAATGAACACACTTTTGCAAGTGTCTTGAGTGCTTGCTCCAATCTGAGGAGCTTGAAGCTTGGGAAGGAAGTCCACACTTATGTTTTGAAGAATAGATTGATTGCCAATCCCTTCATTTGCAGTGGCCTTGTTGATGTTTACTGCAAATGTAATAACATGAGGTATGCAGAGTCAGTTCATTCAGAATTGAGGATGCAGAATGTATATTCGATCACATCAATGATTGTTGGCTATTCGTCTCAAGGTAACATGGCAGAAGCCAGAAAGCTTTTTGATTCCTTGGATGAAAAGAATTCTGTTGTGTGGACTGCTTTGTTTTTTGGGTATGTTAAATTGCAGCAGTGTGAAGCAGTTTTTGAACTTTTAAGTGAATATAGGAAGGAGGCAAAAGTTCCTGATGTGCTAATTCTTATCAGCATAATTGGAGCTTGTGCTATACAAGCTGCTCTGGCTCCTGGTAAGCAGATACACAGTTACATGCTTCGAGCAGGCATCAAATTGGATACAAAACTGACAAGTTCATTGGTTGATATGTACTCAAAATGTGGAAGTATCATTTATGCAGAAAGGATTTTTAGAGAAGTTAGTGATAAGGATTCCATTATTTACAACATTATGATAGCTGGTTATGCTCACCATGGATGGGAAAATGAAGCAGTCCAGCTTTTCGAGGAAATGGTTGAAAATGATCTCAAACCAGATGCAATCACTTTTGTTGCACTACTTTCAGCTTGTCGACACGGTGGTTTGGTAGAACTTGGTGAACATTTTTTTGATTCTATGTCAAATGATTACAATATTAATCCTGAAATTGATCATTATGCTTGTATGATTGACTTGTATGGAAGGGCTAACCAACTAGATAAAGCATTGGAGTTCATGAGAAAGATTCCCATACAGTTAGATGCTGTCATTTGGGGAGCATTTCTGAATGCTTGTAGGATCAATGGGAATGCTGAACTTGCAAGAGAAGCAGAAGATGAACTGTTGGTAATCGAAGGAGAAAATGGAGCTCGATACGTACAGTTAGCTAATGTATATGCTGCAGAAGGAAACTGGGAGGAGATGGGAAGAATAAGGAAGAAAATGAAAGGAAAGGAGGTTAAGAAGAATGCTGGTTGTAGTTGGGTTTTTGTGGAAAGTAAGTTCCATGTATTCATTTCTGGTGATAGATTTCACTCAAAAAATGAAGCTATATATTCAACCTTAGCCTCCTTGACTGATGAGCTACTTTACAAAGATGAAGCATTTTCAGCCGTTAATTTGTGA 2034 38.84 MKHLKHGLLCHVQGIKSGFTPTIFTSNQLINFYAKHGLLNDAQKLFDEMPERNVFSWNAIISAYIKSQNLRTARALFDSAVYKDLVTYNSMLSGYARSDGYEGKALGFFMEMQTAPDMIRIDEFSLIIMLNLTAKLCVISYGKQLHSFMLKTANDLSVFAASSLIDMYSKCGFFKEACRVYYGCGEVVDSVSRNAMVAACCREGEIDVALDLFWKELEQNDVVAWNTMISGFVQNGYEEESLKLFVRMADEKVGWNEHTFASVLSACSNLRSLKLGKEVHTYVLKNRLIANPFICSGLVDVYCKCNNMRYAESVHSELRMQNVYSITSMIVGYSSQGNMAEARKLFDSLDEKNSVVWTALFFGYVKLQQCEAVFELLSEYRKEAKVPDVLILISIIGACAIQAALAPGKQIHSYMLRAGIKLDTKLTSSLVDMYSKCGSIIYAERIFREVSDKDSIIYNIMIAGYAHHGWENEAVQLFEEMVENDLKPDAITFVALLSACRHGGLVELGEHFFDSMSNDYNINPEIDHYACMIDLYGRANQLDKALEFMRKIPIQLDAVIWGAFLNACRINGNAELAREAEDELLVIEGENGARYVQLANVYAAEGNWEEMGRIRKKMKGKEVKKNAGCSWVFVESKFHVFISGDRFHSKNEAIYSTLASLTDELLYKDEAFSAVNL 677
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19079537 19081570 + MELO3C012561.2.1 Cme01g01469 318445

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g01469 677 Pfam PPR repeat family 453 500 IPR002885 -
Cme01g01469 677 Pfam PPR repeat family 221 268 IPR002885 -
Cme01g01469 677 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 22 56 IPR002885 -
Cme01g01469 677 Pfam PPR repeat 18 49 IPR002885 -
Cme01g01469 677 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 189 224 IPR002885 -
Cme01g01469 677 Pfam E motif 573 632 IPR046848 -
Cme01g01469 677 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 84 115 IPR002885 -
Cme01g01469 677 TIGRFAM PPR: pentatricopeptide repeat domain 324 353 IPR002885 -
Cme01g01469 677 TIGRFAM PPR: pentatricopeptide repeat domain 194 223 IPR002885 -
Cme01g01469 677 TIGRFAM PPR: pentatricopeptide repeat domain 457 490 IPR002885 -
Cme01g01469 677 TIGRFAM PPR: pentatricopeptide repeat domain 223 256 IPR002885 -
Cme01g01469 677 Pfam PPR repeat 86 113 IPR002885 -
Cme01g01469 677 Pfam PPR repeat 355 381 IPR002885 -
Cme01g01469 677 Pfam PPR repeat 55 79 IPR002885 -
Cme01g01469 677 Pfam PPR repeat 191 213 IPR002885 -
Cme01g01469 677 Pfam PPR repeat 428 451 IPR002885 -
Cme01g01469 677 Pfam PPR repeat 295 321 IPR002885 -
Cme01g01469 677 Pfam PPR repeat 327 353 IPR002885 -
Cme01g01469 677 Pfam PPR repeat 529 551 IPR002885 -
Cme01g01469 677 Pfam PPR repeat 162 181 IPR002885 -
Cme01g01469 677 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 454 488 IPR002885 -
Cme01g01469 677 Gene3D Tetratricopeptide repeat domain 406 505 IPR011990 GO:0005515
Cme01g01469 677 Gene3D Tetratricopeptide repeat domain 119 274 IPR011990 GO:0005515
Cme01g01469 677 Gene3D Tetratricopeptide repeat domain 285 405 IPR011990 GO:0005515
Cme01g01469 677 Gene3D Tetratricopeptide repeat domain 506 649 IPR011990 GO:0005515
Cme01g01469 677 PANTHER - 189 351 - -
Cme01g01469 677 PANTHER - 333 634 - -
Cme01g01469 677 PANTHER - 58 215 - -
Cme01g01469 677 PANTHER - 3 66 - -
Cme01g01469 677 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 322 356 IPR002885 -
Cme01g01469 677 Gene3D Tetratricopeptide repeat domain 1 118 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g01469 - - - cmo:107990873 1345.1
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01469 Cme-Chr1:19079537 Cme10g00100 Cme-Chr10:701766 4.86E-31 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g563 . . . . . . . . Cmo19g00661 . . . . . . . Cpe15g00525 Bhi05g01201 . . . . . . Cla02g00543 . . . . . . . . . . . Csa07g00783 . Cme01g01469 . . . Bda14g00541 . . . . . . Cmo16g00372 . Cma19g00651 . Car19g00495 . . . . . . . . . . . . . . . . Lsi11g01072 . Chy01g00820 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013461 1 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme01g01469 Cme_Chr01 FPKM 5.164247 5.154928 3.692092 4.348388 8.823456 9.527904 8.757822 5.892768 5.89533 6.018121