Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g01479 ATGATGCCTGAAAATGAACAACAATTAGTAAGTGTTCCACCAGGTTTTCGATTCCATCCAACAGATGAGGAGCTTCTTTATTACTACCTTAGGAAGAAGGTTTCGTTTGAAGCCATTGAGCTTGATGTTATCAGGGAAGTGGATCTAAACAAACTGGAGCCTTGGGATCTCAAAGATAAATGTAGAATTGGATCTGGGCATCAAAACGAGTGGTATTTCTTTAGCCATAAGGACAAAAAATATCCAACTGGAACTCGAACAAATAGAGCAACCAGTGCTGGGTTTTGGAAGGCAACAGGGAGGGACAAAACCATTCACATGAGCAGTTCCAATTCCAATTCCAAAAGGATTATTGGCATGAGGAAGACGTTGGTTTTCTACACAGGTCGTGCTCCTCATGGCCAAAAGACTGATTGGATCATGCATGAATACCGTCTTGAACATCACGATCCCGAGGTGCAGGAAGATGGGTGGGTGGTGTGCAGAGTTTTCAAGAAGAAAAGTCAGAAGCCAGAGGTTCCGGAAGAGCAGCACTTAGATTACTATGCGCATACGAAGCTAGGTGGCAGTTCTGGTTCGGCGGAGGGTACAGGAATGGGAGAGCCGAAAAACAATAATAATCATATGCAAGAACCACATAATAATAATGATTATAGCTTTGATGGTTGCATGCAACTGCCCCAGCTATTTAGTCCAGAGTCGTCGTCAGTTCCAACGCTACCCATCTCTTTAAACGCTGCCGCTGCTGCTGTAGAGTGTCCTCAAAATATATGGAGGCTAAGTTGCGGGGTGGTGCAACATGAGCGGTTGAACACTACTGATTGGTCATTCTTGAATAGGCTGCTCGCTTTGGATCAACAATCTCGTTCCAAATCTACGCTTTCAGATGATCTTACTATTTCCAGAAACTTTTCATTTCCATTTCCCTATCCTTATTCTCTTCCATCTGGTCCCGACTTTATCAAATTCTCCAAGTAG 978 43.56 MMPENEQQLVSVPPGFRFHPTDEELLYYYLRKKVSFEAIELDVIREVDLNKLEPWDLKDKCRIGSGHQNEWYFFSHKDKKYPTGTRTNRATSAGFWKATGRDKTIHMSSSNSNSKRIIGMRKTLVFYTGRAPHGQKTDWIMHEYRLEHHDPEVQEDGWVVCRVFKKKSQKPEVPEEQHLDYYAHTKLGGSSGSAEGTGMGEPKNNNNHMQEPHNNNDYSFDGCMQLPQLFSPESSSVPTLPISLNAAAAAVECPQNIWRLSCGVVQHERLNTTDWSFLNRLLALDQQSRSKSTLSDDLTISRNFSFPFPYPYSLPSGPDFIKFSK 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19241451 19243312 - MELO3C012573.2.1 Cme01g01479 318455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g01479 325 SUPERFAMILY NAC domain 8 166 IPR036093 GO:0003677|GO:0006355
Cme01g01479 325 MobiDBLite consensus disorder prediction 186 215 - -
Cme01g01479 325 Gene3D NAC domain 21 171 IPR036093 GO:0003677|GO:0006355
Cme01g01479 325 ProSiteProfiles NAC domain profile. 12 166 IPR003441 GO:0003677|GO:0006355
Cme01g01479 325 MobiDBLite consensus disorder prediction 197 215 - -
Cme01g01479 325 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 7 291 - -
Cme01g01479 325 PANTHER PROTEIN SOMBRERO 7 291 - -
Cme01g01479 325 Pfam No apical meristem (NAM) protein 13 146 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01479 Cme-Chr1:19241451 Cme09g00127 Cme-Chr9:953358 2.88E-85 dispersed
Cme01g01479 Cme-Chr1:19241451 Cme06g02615 Cme-Chr6:33401593 8.53E-76 transposed
Cme01g01479 Cme-Chr1:19241451 Cme09g01650 Cme-Chr9:21231803 2.18E-75 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40760 PF02365 NAM 4.30E-39 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g01479 - - csv:101216749 639.032