Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g01486 ATGGCTAATCAGCTGCACAGCTACAACTCCGTCTATGGTGCGGCGTCTGCCTCTGCCTCTGCCACTGCGGTTCCATCTCTTCCCACCACGTACTCGTCTTCCCGTTCCCTTTCCGACATCGTCTCCGGCCGTTATCTCCTGCCAGACTCGCTGTCCTCCGGTGTCTCCATTAAGCAGTCTGTAACTGATCGTGGTACCTCCATGTATTCGACCCAGAAAGAAGGCCCGTTGTCGTCTGCCGATATTGTCCCAAGGACGTCGCATTTGGTCACTCAATTCTCTTGGCCGGGTTCTCATGTGGCAGCTGCACTGGACTCTGTTATTTCTGGCATCAAACGTTCTTCTGACGTGCTCTACGATCAGACTGTTTTGGGTTCCTATAACACTTTGGGGCAAAGTGAAGCCTGGTATACTTCAAATTCTTTAGCCAAGCGTCCTAGATTTGAAAGTACAAGCAATTTGCCTGTATATCCACAGAGGCCAGGAGAGAAGGACTGTGCCCACTATATGCTCACAAGAACCTGTAAATTTGGAGATAGCTGCAAGTTTGACCATCCTATTTGGGTTCCTGAAGGTGGAATCCCAGATTGGAAAGAGGTCCCACAAATAGCTAATAGTGAAGATCTCCCAGAAAGACTTGGGGATCCAGATTGTCCATACTTTTTGAAAACTCAAAGATGTAAATTTGGTTCAAGGTGCAAGTTCAATCACCCTAAAGATAGATCTGATTCTGTGGGTGCTGAAAAATCTGATGCTTCAAAATTACCTGAGAGACCATCTGAGCCACTGTGTGCATTCTATATTAAGACGGGAAATTGCAAATTTGGTATCAACTGCAAGTTCCATCACCCAAAAGATATCCAAATTTTATCGGGGGAAGAAAATGGAAATAGCGAACAAACTTTGATGGCAAAGACAGAAGAAAGAGCTGGAGACGTCAAGCTTAAGCCGCCTCCTGTTTCATTGTCACCAGCCCTAATGCACAATTCTAAAGGACTTCCGATTAGACCGGGCGAAGTGGATTGTCCATTCTACTTGAAAACTGGCAGTTGCAAGTATGGTACCACTTGCCGCTACAATCACCCTGACAGAAATGCAATCAATCCATCTACTCCTGCAATGGTTCATCCTGCTATGGTTTCAACTGCTAATATGAATACTGGATTTGTTAATCCTTCTAATGCTATTTATCAAGCTGTTGACCCCAGATTGATTCAGCCATTGTTGGGATCTGGCTCAAGTATTTACCCTCAACGACCTGGGCAGATAGAATGTGATTATTATATGAAGACTGGGGACTGTAAATTTGGGGAACGCTGCAAATTTCATCACCCTATTGATCGGTCAGCACCAAAGCAGGGTGCTCTACATAATGTGAAACTAACACTGGCAGGACTACCGAGGAGAGAGGAGGCCATAATTTGTCCATATTATCTGAAAACTGGCACATGCAAGTATGGCACTACTTGCAAATTTGACCACCCACCTCCTGGAGAAGTGATGACAATGGCTGCAATACAATCTGCTCCAGGAAAAGAAGGCGAAGATCGGATAGATGAATCAGTGGACGAACGGCTGTAG 1581 45.54 MANQLHSYNSVYGAASASASATAVPSLPTTYSSSRSLSDIVSGRYLLPDSLSSGVSIKQSVTDRGTSMYSTQKEGPLSSADIVPRTSHLVTQFSWPGSHVAAALDSVISGIKRSSDVLYDQTVLGSYNTLGQSEAWYTSNSLAKRPRFESTSNLPVYPQRPGEKDCAHYMLTRTCKFGDSCKFDHPIWVPEGGIPDWKEVPQIANSEDLPERLGDPDCPYFLKTQRCKFGSRCKFNHPKDRSDSVGAEKSDASKLPERPSEPLCAFYIKTGNCKFGINCKFHHPKDIQILSGEENGNSEQTLMAKTEERAGDVKLKPPPVSLSPALMHNSKGLPIRPGEVDCPFYLKTGSCKYGTTCRYNHPDRNAINPSTPAMVHPAMVSTANMNTGFVNPSNAIYQAVDPRLIQPLLGSGSSIYPQRPGQIECDYYMKTGDCKFGERCKFHHPIDRSAPKQGALHNVKLTLAGLPRREEAIICPYYLKTGTCKYGTTCKFDHPPPGEVMTMAAIQSAPGKEGEDRIDESVDERL 526
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19397689 19414257 - MELO3C012579.2.1 Cme01g01486 318462

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g01486 526 Gene3D - 418 509 - -
Cme01g01486 526 Gene3D - 159 254 - -
Cme01g01486 526 Gene3D - 256 376 - -
Cme01g01486 526 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 422 445 IPR000571 GO:0046872
Cme01g01486 526 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 162 186 IPR000571 GO:0046872
Cme01g01486 526 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 261 285 IPR000571 GO:0046872
Cme01g01486 526 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 474 496 IPR000571 GO:0046872
Cme01g01486 526 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 338 362 IPR000571 GO:0046872
Cme01g01486 526 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 216 239 IPR000571 GO:0046872
Cme01g01486 526 MobiDBLite consensus disorder prediction 239 256 - -
Cme01g01486 526 ProSiteProfiles Zinc finger C3H1-type profile. 419 447 IPR000571 GO:0046872
Cme01g01486 526 ProSiteProfiles Zinc finger C3H1-type profile. 469 497 IPR000571 GO:0046872
Cme01g01486 526 ProSiteProfiles Zinc finger C3H1-type profile. 336 364 IPR000571 GO:0046872
Cme01g01486 526 MobiDBLite consensus disorder prediction 239 258 - -
Cme01g01486 526 SUPERFAMILY CCCH zinc finger 162 187 IPR036855 GO:0046872
Cme01g01486 526 SUPERFAMILY CCCH zinc finger 340 363 IPR036855 GO:0046872
Cme01g01486 526 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 37 70 508 - -
Cme01g01486 526 ProSiteProfiles Zinc finger C3H1-type profile. 160 188 IPR000571 GO:0046872
Cme01g01486 526 PANTHER CCCH ZINC FINGER/TIS11-RELATED 70 508 IPR045877 GO:0003729
Cme01g01486 526 SUPERFAMILY CCCH zinc finger 261 285 IPR036855 GO:0046872
Cme01g01486 526 SUPERFAMILY CCCH zinc finger 217 241 IPR036855 GO:0046872
Cme01g01486 526 ProSiteProfiles Zinc finger C3H1-type profile. 212 240 IPR000571 GO:0046872
Cme01g01486 526 ProSiteProfiles Zinc finger C3H1-type profile. 258 286 IPR000571 GO:0046872
Cme01g01486 526 SMART c3hfinal6 419 446 IPR000571 GO:0046872
Cme01g01486 526 SMART c3hfinal6 160 187 IPR000571 GO:0046872
Cme01g01486 526 SMART c3hfinal6 212 239 IPR000571 GO:0046872
Cme01g01486 526 SMART c3hfinal6 258 285 IPR000571 GO:0046872
Cme01g01486 526 SMART c3hfinal6 336 363 IPR000571 GO:0046872
Cme01g01486 526 SMART c3hfinal6 469 496 IPR000571 GO:0046872
Cme01g01486 526 SUPERFAMILY CCCH zinc finger 422 447 IPR036855 GO:0046872
Cme01g01486 526 SUPERFAMILY CCCH zinc finger 472 496 IPR036855 GO:0046872
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g01486 - - - csv:101212896 1043.88
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01486 Cme-Chr1:19397689 Cme02g00920 Cme-Chr2:12823681 1.97E-25 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1194 Blo04g00450 Blo13g00612 . . . . Bma08g00829 . . . . . . . . . . Bhi05g01975 Tan02g0011 . . . . . . . . . . . . . . . . . Csa07g01227 . . . . . . Bpe15g00932 . Bma03g00483 . . . . . . . . Cpe15g00914 . . . . . . . . . . . . . . . . . Chy01g00832 Cme01g01486
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004512 1 5 3 1 2 2 0 1 2 1 1 1 0 1 1 1 1 2 1 2 1 1 1 1 1 2 1 1 3 1 42
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40761 PF00642 zf-CCCH 8.80E-10 CL0537 Cme TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme01g01486 Cme_Chr01 FPKM 1.101333 2.047487 0.0 0.927858 0.0 0.603344 0.814407 7.858225 8.945179 8.370711