Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g01493 ATGTTCCATCCTAAGAAAGCTTCCACTATGAATTCTCACGAGAGAGGGATGTGCGTTCAAGGCGACTCCGGCCTCGTCCTCACCACCGACCCCAAGCCCCGCCTTCGCTGGACTGTTGAGCTTCACGAGCGCTTCGTCGATGCCGTCACTCAGCTCGGAGGCCCTGATAAGGCCACCCCAAAGACCATCATGAGAGTTATGGGTGTAAAGGGTCTTACTCTTTACCACCTCAAGAGCCATCTCCAGAAATTTAGACTGGGAAAGCAACCTCACAAGGAATTCAATGATCATTCAATTAAGGATGGCATGAGAGCTTCAGGTTTAGAACTTCATCGAAACACGGCTTCTTCATCCAATATGATCAACCGCACCATGAACGATGGTAACTCACACATGGTTGATGCGATTAGGATGCAAATGGAGGTGCAGAGAAGATTGCATGAACAACTAGAGGTGCAAAGACACTTGCAACTGCGAATCGAGGCACAAGGGAAGTACATGCAGAGCATACTAGAAAAGGCTTGTCAAACCCTAGCGGGTGAAAACATGGCAGCTTCCGGCGGCTACAAGGCCATGGGTGGGATCCCAAATAACAATAATAATCAGCAAGATTTTGGCTCCCCTCTTGGCTTCCCATCTTTTCAAGACCTGAACCTCTATGGAGGCGACCAGCTTGATCTTCAGCAAAACGTGGATGGATTCGTGTCTCATAACGATAGCTTACTATGCTTGGGAAAGAAGAAGTCTAGGCCGACACCAAGTACGCCAAACTACGGGGGCAGCTCGGGAAAAGGTGCGTTGGACTGGCCAGATGATCTCCGGCTGCAAGATATAGGAATGGCGCCGCCCACGTCGTGCGTGGGGCAGCAAGAAGATGATTTCAAAGGCATGGGTGGGACGCTGGTGGCCGAAAGAGATCATTTGGAGGAAATGTATGAGGCGAAGCCAGTTGTGTCGGATGATGAAGGCTTGGGAGATCACAAGAAGTATGACGTGAATAATAATAACAACAACAATAATAATAATTCGTCCATAAAGCTTCAGAGGCCGTCGCCCCGAAGGGTTCCCCTTTCCGTGGATAGGGCTAACCACCCTCTTATTACCACTGCTCCTCAGTCCACACATTCACCTTTTGGTTAA 1140 49.39 MFHPKKASTMNSHERGMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDGMRASGLELHRNTASSSNMINRTMNDGNSHMVDAIRMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLAGENMAASGGYKAMGGIPNNNNNQQDFGSPLGFPSFQDLNLYGGDQLDLQQNVDGFVSHNDSLLCLGKKKSRPTPSTPNYGGSSGKGALDWPDDLRLQDIGMAPPTSCVGQQEDDFKGMGGTLVAERDHLEEMYEAKPVVSDDEGLGDHKKYDVNNNNNNNNNNSSIKLQRPSPRRVPLSVDRANHPLITTAPQSTHSPFG 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19617312 19620141 - MELO3C012590.2.1 Cme01g01493 318469

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g01493 379 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 29 89 IPR017930 -
Cme01g01493 379 MobiDBLite consensus disorder prediction 330 349 - -
Cme01g01493 379 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 1 282 IPR044848 GO:0003700
Cme01g01493 379 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 32 87 IPR006447 GO:0003677
Cme01g01493 379 MobiDBLite consensus disorder prediction 246 266 - -
Cme01g01493 379 MobiDBLite consensus disorder prediction 365 379 - -
Cme01g01493 379 Pfam MYB-CC type transfactor, LHEQLE motif 132 177 IPR025756 -
Cme01g01493 379 Pfam Myb-like DNA-binding domain 35 83 IPR001005 -
Cme01g01493 379 Gene3D - 31 89 - -
Cme01g01493 379 PANTHER MYB FAMILY TRANSCRIPTION FACTOR APL 1 282 - -
Cme01g01493 379 SUPERFAMILY Homeodomain-like 31 87 IPR009057 -
Cme01g01493 379 MobiDBLite consensus disorder prediction 316 379 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g01493 - - - csv:101217821 743.036
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme01g01493 Cme11g01645 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01493 Cme-Chr1:19617312 Cme08g01009 Cme-Chr8:6573492 1.41E-50 dispersed
Cme02g00973 Cme-Chr2:14263757 Cme01g01493 Cme-Chr1:19617312 1.92E-36 transposed
Cme04g00960 Cme-Chr4:12941430 Cme01g01493 Cme-Chr1:19617312 5.47E-39 transposed
Cme04g01468 Cme-Chr4:20916450 Cme01g01493 Cme-Chr1:19617312 3.46E-49 transposed
Cme04g01787 Cme-Chr4:25571642 Cme01g01493 Cme-Chr1:19617312 2.01E-57 transposed
Cme04g02174 Cme-Chr4:28969920 Cme01g01493 Cme-Chr1:19617312 3.94E-48 transposed
Cme08g01857 Cme-Chr8:22407507 Cme01g01493 Cme-Chr1:19617312 8.21E-32 transposed
Cme06g00381 Cme-Chr6:2389842 Cme01g01493 Cme-Chr1:19617312 1.16E-22 transposed
Cme01g01493 Cme-Chr1:19617312 Cme11g01645 Cme-Chr11:24315395 1.62E-120 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1171 Blo04g00455 Blo13g00605 . . Bpe07g00477 . Bma08g00825 . . . . . . . . . . Bhi05g01981 Tan02g0015 Cmetu01g1460 Lac12g0030 . . . Cla02g01833 Cam02g1942 Cec02g1969 Cco02g2008 Clacu02g1922 Cmu02g1871 Cre02g2184 . . . . . Csa07g01218 . Cme11g01645 Blo15g00640 . . . Bpe15g00926 . Bma03g00488 Bma12g00569 Sed01g0770 . . . . . . Cpe15g00910 Cpe05g01028 Bhi10g00928 Tan05g0578 Cmetu11g1511 . Hepe08g0654 . . . . . . . . . . Csa06g01145 Chy11g01047 Cme01g01493
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme11g01645 CCT 22 220 G2-like Transcription Factor Family AT3G24120 54.4 1.1e-43 174.1
Cme01g01493 CCT 16 176 G2-like Transcription Factor Family AT3G24120 59.8 5.9e-42 168.3
Cme04g01468 . 4 152 G2-like Transcription Factor Family AT3G24120 53.7 1.0e-38 157.5
Cme08g01009 . 31 186 G2-like Transcription Factor Family AT3G24120 56.4 3.0e-38 156.0
Cme06g01406 . 298 500 G2-like Transcription Factor Family AT5G16560 54.5 1.6e-45 180.6
Cme04g00145 . 298 503 G2-like Transcription Factor Family AT5G16560 50.9 6.4e-39 158.7
Cme04g00674 CCT 1 159 G2-like Transcription Factor Family AT5G42630 59.0 4.3e-37 151.8
Cme02g01289 CCT 4 340 G2-like Transcription Factor Family AT2G03500 51.4 6.1e-80 295.0
Cme03g00787 . 20 258 G2-like Transcription Factor Family AT1G25550 55.2 1.3e-51 200.3
Cme10g00288 . 19 255 G2-like Transcription Factor Family AT1G25550 53.4 2.6e-47 186.0
Cme08g01427 . 1 301 G2-like Transcription Factor Family AT5G05090 55.7 2.5e-76 282.3
Cme04g02132 . 1 286 G2-like Transcription Factor Family AT5G05090 55.9 4.9e-72 268.1
Cme11g01645 CCT 22 220 G2-like Transcription Factor Family AT3G24120 54.4 1.1e-43 174.1
Cme01g01493 CCT 16 176 G2-like Transcription Factor Family AT3G24120 59.8 5.9e-42 168.3
Cme04g01468 . 4 152 G2-like Transcription Factor Family AT3G24120 53.7 1.0e-38 157.5
Cme08g01009 . 31 186 G2-like Transcription Factor Family AT3G24120 56.4 3.0e-38 156.0
Cme01g01493 CCT 1 379 G2-like Transcription Factor Family AT1G79430 53.1 4.0e-85 312.0
Cme11g01645 CCT 1 223 G2-like Transcription Factor Family AT1G79430 72.3 4.9e-75 278.5
Cme04g01787 . 72 273 G2-like Transcription Factor Family AT5G18240 52.7 1.2e-40 164.1
Cme08g01008 . 54 270 G2-like Transcription Factor Family AT2G01060 65.2 1.2e-53 206.8
Cme08g01427 . 1 301 G2-like Transcription Factor Family AT3G10760 63.5 6.4e-93 337.8
Cme04g02132 . 1 286 G2-like Transcription Factor Family AT3G10760 59.2 4.6e-83 305.1
Cme08g01427 . 1 203 G2-like Transcription Factor Family AT2G40970 62.1 2.3e-63 239.2
Cme04g02132 . 1 199 G2-like Transcription Factor Family AT2G40970 63.3 1.1e-57 220.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001069 3 4 3 4 3 2 4 2 2 2 2 2 4 2 2 4 2 3 3 2 2 2 2 2 2 2 1 6 5 2 81
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40762 PF00249 Myb_DNA-binding 2.10E-06 CL0123 Cme TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme01g01493 Cme_Chr01 FPKM 17.93235 19.469467 20.618362 20.301327 23.803244 22.862764 22.469879 25.353727 26.911999 23.877745