Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g01498 ATGAAGTCACATCATGATGGTAGAAGTGTTCATAGAAAGTCAAAGAAACTCCAACTGGCGAAATACTTAGATGTAATTGGTCGAAAGGTGAGCCACGTGGATGGAGCTACGAATTCCCAGCCTTACGTGAGCTCACCGTTCACTCTACCGCCATTCGATTCACTGCCGGACAACGCACCACCTTACTGCTCCTATCCCCCAATTACTCCTCAGCCTCCTTCTTCGCCCTTCACCTACATTTCGTCGCCGCCGCCGCCACCTTTTTATTATCTCCCACCTCCGACCCCAACCTACGGCTTTCCTCCGTCTCCCCCCAGTCTCACCCCACCTTACTATTACGAGCCCAGCCCTCCAAGCTACGTTCCGAGCCCACCCTCTCCGACGGTGTTCGTGCCGAGCCCACCCGTGTTCCAACCACCAGTTATTTACCCTCCACCGAGCGTACCACCACCTCCCCACTCCGCACCCAATATAGCCCTGTGGTGCGTGGCCAAGCCCTCTGTGCCGGACCCAATCATCCAAGAGGCCATGAACTATGCCTGCGGGACGGTGGCGGATTGCGATTCTATTCTCCCTAGCGGACCCTGCTTTTTGCCCAACACACTCATAGCCCACGCTTCCTACGCCTTCAATAGTTATTGGCAGCGAACCAAGGTGGGTGGTGGCACTTGCGAATTTGGTGGCACTGCGATGCTTGTCACCGTCGATCCTAGTTACGATGGGTGTCATTTCAATTACACGTAG 744 54.84 MKSHHDGRSVHRKSKKLQLAKYLDVIGRKVSHVDGATNSQPYVSSPFTLPPFDSLPDNAPPYCSYPPITPQPPSSPFTYISSPPPPPFYYLPPPTPTYGFPPSPPSLTPPYYYEPSPPSYVPSPPSPTVFVPSPPVFQPPVIYPPPSVPPPPHSAPNIALWCVAKPSVPDPIIQEAMNYACGTVADCDSILPSGPCFLPNTLIAHASYAFNSYWQRTKVGGGTCEFGGTAMLVTVDPSYDGCHFNYT 247
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19706343 19710464 - MELO3C012594.2.1 Cme01g01498 318474

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g01498 247 Pfam X8 domain 160 231 IPR012946 -
Cme01g01498 247 SMART X8_cls 160 244 IPR012946 -
Cme01g01498 247 PANTHER EXTENSIN-LIKE 118 247 - -
Cme01g01498 247 Gene3D - 155 244 - -
Cme01g01498 247 PRINTS Proline rich extensin signature 69 85 - -
Cme01g01498 247 PRINTS Proline rich extensin signature 133 149 - -
Cme01g01498 247 PRINTS Proline rich extensin signature 106 127 - -
Cme01g01498 247 PRINTS Proline rich extensin signature 93 105 - -
Cme01g01498 247 PANTHER BETA-1,3 GLUCANASE 118 247 IPR044788 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g01498 - - - csv:101214150 215.698
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01498 Cme-Chr1:19706343 Cme07g00642 Cme-Chr7:5489839 1.84E-38 dispersed
Cme01g01498 Cme-Chr1:19706343 Cme12g01948 Cme-Chr12:25392192 8.40E-25 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1163 . . . . Bpe07g00474 . . . . . . . . . . . . Bhi05g01989 . . Lac12g0036 Hepe02g0010 . . . . . . . . . . . . . . Csa07g01215 . . . . . . . . . Bma12g00577 . . . . . . . Cpe15g00907 . . . . . . . . . . . . . . . . . Chy01g00848 Cme01g01498
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007417 1 1 1 3 1 1 1 1 1 1 1 1 0 1 1 1 1 3 1 1 1 1 1 1 0 1 1 3 2 2 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme01g01498 Cme_Chr01 FPKM 32.613777 34.559086 10.653358 9.359378 41.813656 36.922607 42.635494 3.649154 4.217752 4.389025