Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g01498 ATGAAGTCACATCATGATGGTAGAAGTGTTCATAGAAAGTCAAAGAAACTCCAACTGGCGAAATACTTAGATGTAATTGGTCGAAAGGTGAGCCACGTGGATGGAGCTACGAATTCCCAGCCTTACGTGAGCTCACCGTTCACTCTACCGCCATTCGATTCACTGCCGGACAACGCACCACCTTACTGCTCCTATCCCCCAATTACTCCTCAGCCTCCTTCTTCGCCCTTCACCTACATTTCGTCGCCGCCGCCGCCACCTTTTTATTATCTCCCACCTCCGACCCCAACCTACGGCTTTCCTCCGTCTCCCCCCAGTCTCACCCCACCTTACTATTACGAGCCCAGCCCTCCAAGCTACGTTCCGAGCCCACCCTCTCCGACGGTGTTCGTGCCGAGCCCACCCGTGTTCCAACCACCAGTTATTTACCCTCCACCGAGCGTACCACCACCTCCCCACTCCGCACCCAATATAGCCCTGTGGTGCGTGGCCAAGCCCTCTGTGCCGGACCCAATCATCCAAGAGGCCATGAACTATGCCTGCGGGACGGTGGCGGATTGCGATTCTATTCTCCCTAGCGGACCCTGCTTTTTGCCCAACACACTCATAGCCCACGCTTCCTACGCCTTCAATAGTTATTGGCAGCGAACCAAGGTGGGTGGTGGCACTTGCGAATTTGGTGGCACTGCGATGCTTGTCACCGTCGATCCTAGTTACGATGGGTGTCATTTCAATTACACGTAG 744 54.84 MKSHHDGRSVHRKSKKLQLAKYLDVIGRKVSHVDGATNSQPYVSSPFTLPPFDSLPDNAPPYCSYPPITPQPPSSPFTYISSPPPPPFYYLPPPTPTYGFPPSPPSLTPPYYYEPSPPSYVPSPPSPTVFVPSPPVFQPPVIYPPPSVPPPPHSAPNIALWCVAKPSVPDPIIQEAMNYACGTVADCDSILPSGPCFLPNTLIAHASYAFNSYWQRTKVGGGTCEFGGTAMLVTVDPSYDGCHFNYT 247
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19706343 19710464 - MELO3C012594.2.1 Cme01g01498 318474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g01498 247 Pfam X8 domain 160 231 IPR012946 -
Cme01g01498 247 SMART X8_cls 160 244 IPR012946 -
Cme01g01498 247 PANTHER EXTENSIN-LIKE 118 247 - -
Cme01g01498 247 Gene3D - 155 244 - -
Cme01g01498 247 PRINTS Proline rich extensin signature 69 85 - -
Cme01g01498 247 PRINTS Proline rich extensin signature 133 149 - -
Cme01g01498 247 PRINTS Proline rich extensin signature 106 127 - -
Cme01g01498 247 PRINTS Proline rich extensin signature 93 105 - -
Cme01g01498 247 PANTHER BETA-1,3 GLUCANASE 118 247 IPR044788 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01498 Cme-Chr1:19706343 Cme07g00642 Cme-Chr7:5489839 1.84E-38 dispersed
Cme01g01498 Cme-Chr1:19706343 Cme12g01948 Cme-Chr12:25392192 8.40E-25 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g01498 - - csv:101214150 215.698