Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g01500 ATGCTTTGTAGTGGATTATTAATAACTGACTTCATCTCCTCTTTCCCCCATCGCCACATTGGGTACGTACAAGTAGCACGGGGAGGTTTTAAGGTTTATACGGACAAAAATAAGATTAAAGCTGATCCCAGTTGCAAGAAACCTGTAACAATAACAAAGGAGACTTCAACAGATGGTACGATTCAACCAAAGGGAGGCCTGCGACGATCAGAGAAGAATATAGAGAAATTTGAAATCTCTGGGGCCAAAAGCACGAGAAGAAGAGCACTTGCTGACATGAGTAATGTCCGAGGCAACTCTACTAGGCAAATACTGCAAGATAGCTCCAAGCATAAGGTTTCAACTGGGACTAGAATTAGTTCTGCTGGCATCTATATCTTATCAAGGAAATCTTCGGGAAAAACGAAGAATGCAGGGGAAGCCTTTGGTGACTTGCATGCTTCACAAAAAGGGCGTGTTAAAGATTCGAAAGGTTGTTCAATCAATGAAAGAAACAAAACAGATGGTCCCTGTTGTGCCAATACTGTGAATGCCAGGAGATCTTTACCAATGCTTAAGAGGATGAACCAGGCAAATGTTTCGAACGCAAAGGAAGTTGCTGAGAAGCCCGAAAAGACCAATAAATCTCAAGCATGTTTTACTAAATCTGGAAAGAAAGCATCAGTCCAAACAAAAAATATCAGAACTCAGCTATGGAATCGCGCAAGTGATGGTTTCATTATAACGGGTCAAGCCAAAGTGGACTCAAGTGCATTGTTGAAAAAGTCTAGTAAGCCCATTGCAAGGATGAAGAAGGCTTCTGGTACTCAAGAGGCATTAAAACCCAAATGTGCACCAGTTGCAATCAAATCAATTTCTAGTACTGCATCATCATCCAAGATTGTGGATCCTTCAGCGTCTCTTTGTGAGGAAATAACTAATGCGTCCATTCAAGGGAAGGATACATCTGAACCTACTTGTAATCCAAGTACAAGTACAGATTTAACTGTCAAGAGAAAAGTTGGTCGTAGAAGATCGTATACATCCTTTTTGGTTGCTGGAGCAAAGTTGCTGGATAAATGTGCTGTTGACACAGAAATAGCTAACCTGCCTAGTATTGATAATGACTACGACCAAATGGAGGTTGCTGAATATGTTGAGGAGATATACGATTACTATTGGGTTACAGAGGCACAAAGTTCATCGCTTTCAAACTACTTATCAGTACAAAAAGAAATTGCCCCCCTTATGCGTGGCATTTTGATCAACTGGTTGATTGAAGTACACTTCAAATTTGACTTGATGCCTGAAACACTATTTCTCTCTGTTACATTGTTTGATCGGTATCTCTCCCTAGTCAAAATCAAGAAGAATGAGATGCAGCTGGTTGGTCTTACTGCACTGTTATTGGCTTCAAAATACGAAGATTTCTGGCATCCTAGGGTTAAAGATCTACTTAGCATTTCAGCTGAGTCCTACTCAAGGGAGCAAATGCTACAAATGGAAGCACTCATTTTGAAGAAGTTGAAGTTTCGCTTGAACGTGCCTACTACATATGTTTTTATGTTAAGATTCCTCAAGGCTGCTCAGTCTGCTAATACTCAGCTTGAACACTTGTCATTTTACTTAATTGAGCTGGCCTTGGTTGAATATGAAGCTCTGAGTTTTAGGCCGTCGTTATTATGTGCATCGGCTTTATATGTTGCACGGTGTACGCTGCGAATGAGTCCAAGCTGGACCAAACTACTAAACAAACATACACGCTACGAAACGTCCCAAATAAGAGAATGTGCTGAGATGATCTTGAAATTTCACCAATCTGCTCAATTGGGACAGCTGAAAGTCACGTATGAGAAGTATATGAAGCCTAATTTTAACGGTGTAGCAGCCATAAAGCCACTCGACAAGCTTCCTCTTTGA 1899 40.76 MLCSGLLITDFISSFPHRHIGYVQVARGGFKVYTDKNKIKADPSCKKPVTITKETSTDGTIQPKGGLRRSEKNIEKFEISGAKSTRRRALADMSNVRGNSTRQILQDSSKHKVSTGTRISSAGIYILSRKSSGKTKNAGEAFGDLHASQKGRVKDSKGCSINERNKTDGPCCANTVNARRSLPMLKRMNQANVSNAKEVAEKPEKTNKSQACFTKSGKKASVQTKNIRTQLWNRASDGFIITGQAKVDSSALLKKSSKPIARMKKASGTQEALKPKCAPVAIKSISSTASSSKIVDPSASLCEEITNASIQGKDTSEPTCNPSTSTDLTVKRKVGRRRSYTSFLVAGAKLLDKCAVDTEIANLPSIDNDYDQMEVAEYVEEIYDYYWVTEAQSSSLSNYLSVQKEIAPLMRGILINWLIEVHFKFDLMPETLFLSVTLFDRYLSLVKIKKNEMQLVGLTALLLASKYEDFWHPRVKDLLSISAESYSREQMLQMEALILKKLKFRLNVPTTYVFMLRFLKAAQSANTQLEHLSFYLIELALVEYEALSFRPSLLCASALYVARCTLRMSPSWTKLLNKHTRYETSQIRECAEMILKFHQSAQLGQLKVTYEKYMKPNFNGVAAIKPLDKLPL 632
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19726006 19730596 + MELO3C012596.2.1 Cme01g01500 318476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g01500 632 SUPERFAMILY Cyclin-like 510 631 IPR036915 -
Cme01g01500 632 Pfam Cyclin, C-terminal domain 509 626 IPR004367 -
Cme01g01500 632 Gene3D - 395 500 - -
Cme01g01500 632 ProSitePatterns Cyclins signature. 411 442 IPR006671 -
Cme01g01500 632 Pfam Cyclin, N-terminal domain 381 507 IPR006671 -
Cme01g01500 632 MobiDBLite consensus disorder prediction 193 213 - -
Cme01g01500 632 Gene3D - 501 631 - -
Cme01g01500 632 CDD CYCLIN 410 499 IPR013763 -
Cme01g01500 632 SUPERFAMILY Cyclin-like 372 507 IPR036915 -
Cme01g01500 632 PANTHER CYCLIN-B3-1-RELATED 147 629 - -
Cme01g01500 632 PANTHER CYCLINS 147 629 IPR039361 -
Cme01g01500 632 CDD CYCLIN 507 595 IPR013763 -
Cme01g01500 632 SMART cyclin_7 416 500 IPR013763 -
Cme01g01500 632 SMART cyclin_7 513 596 IPR013763 -
Cme01g01500 632 SMART Cyclin_C_2 509 627 IPR004367 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01500 Cme-Chr1:19726006 Cme08g01425 Cme-Chr8:12648898 1.14E-73 dispersed
Cme01g01500 Cme-Chr1:19726006 Cme04g00381 Cme-Chr4:3058212 6.29E-54 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g01500 K21777 - csv:101213908 1103.58