Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g01501 ATGCATAAATTAACTAGAGGACATCGAGATAAACTCCATCAATTTATGGCTATAACTGGTACAAGTGAAAAGGTTGCTCATCAGGCCTTGAAGGCTAGCGATTGGCATCTCGAAGGAGCTTTTGATGTGTTTTATAGTCAACCCCAAATTAAAGCATTCACCGACTCTAGACATTTGGAAGAGCTCTATAACAGATATAAAGACTCATATGTTGATATGATATTGGCTGATGGTATCTCACTGCTCTGCGATGACCTTCAGGTGGATCCTCAAGATATTGTTATGTTGGTTGTTTCTTGGCATATGAAGGCAAACACAATGTGTGAGTTTTCCAAACAGGAGTTTATAGGTGGATTACAAGCACTAGGGATAGATTCTCTGGAGAGGTTCCGAGAAAGGATTCCATATATGCGTTCTGAGTTGAAAGATGACCAAAAGTTCCGTGAGATTTACAACTTCGCATTTGGTTGGGCAAAAGAAAAGGGGCAAAAATCTTTAGCATTGGACACCGCAATTGGAATGTGGCAGTTACTATTTGCTGAAAAGCAGTGGCTCCTGGTTGACCACTGGTGTCAGTTCTTGCAGGTAATGTTGCTAAACTGTCTGTTTGAAAATGACCGAACTTCTGTTATGTGGAGCAAAGCTTCCTCTTGTTGGGGCTCGGCATAA 669 41.26 MHKLTRGHRDKLHQFMAITGTSEKVAHQALKASDWHLEGAFDVFYSQPQIKAFTDSRHLEELYNRYKDSYVDMILADGISLLCDDLQVDPQDIVMLVVSWHMKANTMCEFSKQEFIGGLQALGIDSLERFRERIPYMRSELKDDQKFREIYNFAFGWAKEKGQKSLALDTAIGMWQLLFAEKQWLLVDHWCQFLQVMLLNCLFENDRTSVMWSKASSCWGSA 222
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19782767 19796310 + MELO3C012597.2.1 Cme01g01501 318477

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g01501 222 Gene3D - 5 47 - -
Cme01g01501 222 SUPERFAMILY UBA-like 6 46 IPR009060 GO:0005515
Cme01g01501 222 PANTHER DEFECTIVE IN CULLIN NEDDYLATION PROTEIN 14 197 - -
Cme01g01501 222 Pfam Cullin binding 131 195 IPR005176 -
Cme01g01501 222 PANTHER RP42 RELATED 14 197 IPR014764 -
Cme01g01501 222 Gene3D Cullin, PONY binding domain 143 214 IPR042460 -
Cme01g01501 222 Gene3D - 53 142 - -
Cme01g01501 222 CDD UBA_DCNL 8 48 - -
Cme01g01501 222 Pfam UBA-like domain 10 47 - -
Cme01g01501 222 ProSiteProfiles DCUN1 domain profile. 54 222 IPR005176 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g01501 K17822 DCUN1D1_2; DCN1-like protein 1/2 - csv:101216476 405.601
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01501 Cme-Chr1:19782767 Cme07g02015 Cme-Chr7:25201005 2.41E-15 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1150 Blo04g00462 Blo13g00602 . . . . Bma08g00821 . . . . . . . Sed05g1833 Cpe04g00866 . Bhi05g01993 Tan02g0025 . . . . . . . . . . . . . . . . . Csa07g01210 . . . . . . Bpe15g00919 . Bma03g00495 . . . . . . . . Cpe15g00904 . . . . . . . . . . . . . . . . . . Cme01g01501
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003443 1 2 2 2 2 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 10 2 1 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme01g01501 Cme_Chr01 FPKM 26.683954 23.533703 5.659162 6.221346 3.912619 5.64547 2.815298 12.51548 10.67609 13.194699