Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g01501 ATGCATAAATTAACTAGAGGACATCGAGATAAACTCCATCAATTTATGGCTATAACTGGTACAAGTGAAAAGGTTGCTCATCAGGCCTTGAAGGCTAGCGATTGGCATCTCGAAGGAGCTTTTGATGTGTTTTATAGTCAACCCCAAATTAAAGCATTCACCGACTCTAGACATTTGGAAGAGCTCTATAACAGATATAAAGACTCATATGTTGATATGATATTGGCTGATGGTATCTCACTGCTCTGCGATGACCTTCAGGTGGATCCTCAAGATATTGTTATGTTGGTTGTTTCTTGGCATATGAAGGCAAACACAATGTGTGAGTTTTCCAAACAGGAGTTTATAGGTGGATTACAAGCACTAGGGATAGATTCTCTGGAGAGGTTCCGAGAAAGGATTCCATATATGCGTTCTGAGTTGAAAGATGACCAAAAGTTCCGTGAGATTTACAACTTCGCATTTGGTTGGGCAAAAGAAAAGGGGCAAAAATCTTTAGCATTGGACACCGCAATTGGAATGTGGCAGTTACTATTTGCTGAAAAGCAGTGGCTCCTGGTTGACCACTGGTGTCAGTTCTTGCAGGTAATGTTGCTAAACTGTCTGTTTGAAAATGACCGAACTTCTGTTATGTGGAGCAAAGCTTCCTCTTGTTGGGGCTCGGCATAA 669 41.26 MHKLTRGHRDKLHQFMAITGTSEKVAHQALKASDWHLEGAFDVFYSQPQIKAFTDSRHLEELYNRYKDSYVDMILADGISLLCDDLQVDPQDIVMLVVSWHMKANTMCEFSKQEFIGGLQALGIDSLERFRERIPYMRSELKDDQKFREIYNFAFGWAKEKGQKSLALDTAIGMWQLLFAEKQWLLVDHWCQFLQVMLLNCLFENDRTSVMWSKASSCWGSA 222
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19782767 19796310 + MELO3C012597.2.1 Cme01g01501 318477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g01501 222 Gene3D - 5 47 - -
Cme01g01501 222 SUPERFAMILY UBA-like 6 46 IPR009060 GO:0005515
Cme01g01501 222 PANTHER DEFECTIVE IN CULLIN NEDDYLATION PROTEIN 14 197 - -
Cme01g01501 222 Pfam Cullin binding 131 195 IPR005176 -
Cme01g01501 222 PANTHER RP42 RELATED 14 197 IPR014764 -
Cme01g01501 222 Gene3D Cullin, PONY binding domain 143 214 IPR042460 -
Cme01g01501 222 Gene3D - 53 142 - -
Cme01g01501 222 CDD UBA_DCNL 8 48 - -
Cme01g01501 222 Pfam UBA-like domain 10 47 - -
Cme01g01501 222 ProSiteProfiles DCUN1 domain profile. 54 222 IPR005176 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01501 Cme-Chr1:19782767 Cme07g02015 Cme-Chr7:25201005 2.41E-15 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g01501 K17822 - csv:101216476 405.601