Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g01504 ATGGCCGCAACTTCGCTCTTCAGATCCGCTCCGGCTGCTTCTTTTGTTCAATCATCGCCTTCATTCTCTTCTCCCGACCAATCTACGGCTTCGTGTGTTAATTTGAATTCTTTGAAGTTTCAATCGAGCATTTTCGGTGCTCAAGTTTCAAGCGGATCATCTTCCTTGCAGCTTCGTAGAAGCCATAATATTCAGCCCATTAAAGCTACAGCCACTGAACTGCCTCCCACAGTTCAAAGTACAATCGTCAATAATAAAGTACAAAAGTACTTCTTGATCCTAATAATTTTAATCTGTTGGCTTCTCAAGAATCAAGGAGCGGTGGAAAGACGAAGGTTGGAATCAATGCAATGGATCTTCCATCTTCTAAAGATGGCCGATTTTAAAGTTCGTTATTCATTGGTCACAGGTTTTGGACGTATTGGAAGGTTGGTATTGCGGAATGCAACCTCGAGGGATGATATTGATGTAGTTGCAGTTAATGATCCGTTTGTTGATGCAAAGTACATGGCATACATGTTCAAGTTTGATTCTACACATGGAAATTTCAAGGGCACGATTAAGGTCATGGATGATTCAACCTTGGAAATCAATGGGAAACAAATAAAGGTTTTAAGTAAAAGGGATCCAGCAGAAATTCCTTGGGGCGAGTTTGGGGCCGAGTTTGTTGTTGAATCATCTGGGGTTTTCACAACCACAAATAAGGCCTCTGCGCACTTGAAGGGTGGAGCCAGGAAAGTAGTCATATCAGCCCCATCAGCTGATGCACCTATGTTCGTTGTTGGAGTTAATGAGATGACATATAAGCCAAGCATGGATATTGTCTCAAATGCAAGTTGTACCACGAATTGCCTTGCTCCTCTTGCGAAGGTGGTTCATGAGGTTTTTGGTATCGCAGATGGTTTGATGACAACCGTGCATGCAACTACAGCTACTCAAAAAACTGTTGATGGGCCCTCGATGAAGGATTGGCGTGGGGGTCGTGGTGCTGCTCAAAATATCATCCCAAGTTCTACCGGTGCTGCAAAGGCTGTGGGAAAGGTTCTTCCAGAGCTCAACGAAAAACTTACAGGGATGGCATTTCGCGTTCCAACACCCAATGTATCTGTGGTGGACTTGACTTGTAGATTAGAGAAGAGTGCTTCTTATGAAGATGTCAAAGCTGCAATCAAATATGCCTCAGAAGGCCCACTCAAGGGTATCCTAGGTTACACGGATGAGGACGTTGTCTCCAATGATTTTGTCGGTGACTCAAGGTCAAGTATATTCGATGCAAAGGCCGGAATAGGTCTCAGCGATTCCTTCATGAAGCTTATCTCTTGGTATGACAACGAGTGGGGATACAGGTACTCACTCTCTCGTGAAGTCATTGGAAATGAGTGCCTACTCATCCGTTTTGTTTTTGGTAAATCTGACAATTATAATACTTGTTTACACAGCAACCGAGTACTGGACCTCATAGAGCACATGGCGTTGGTGGCAGCCAACAAGTGA 1494 43.91 MAATSLFRSAPAASFVQSSPSFSSPDQSTASCVNLNSLKFQSSIFGAQVSSGSSSLQLRRSHNIQPIKATATELPPTVQSTIVNNKVQKYFLILIILICWLLKNQGAVERRRLESMQWIFHLLKMADFKVRYSLVTGFGRIGRLVLRNATSRDDIDVVAVNDPFVDAKYMAYMFKFDSTHGNFKGTIKVMDDSTLEINGKQIKVLSKRDPAEIPWGEFGAEFVVESSGVFTTTNKASAHLKGGARKVVISAPSADAPMFVVGVNEMTYKPSMDIVSNASCTTNCLAPLAKVVHEVFGIADGLMTTVHATTATQKTVDGPSMKDWRGGRGAAQNIIPSSTGAAKAVGKVLPELNEKLTGMAFRVPTPNVSVVDLTCRLEKSASYEDVKAAIKYASEGPLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSDSFMKLISWYDNEWGYRYSLSREVIGNECLLIRFVFGKSDNYNTCLHSNRVLDLIEHMALVAANK 497
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19812082 19815890 - MELO3C012599.2.1 Cme01g01504 318480

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g01504 497 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 285 442 IPR020829 GO:0016620
Cme01g01504 497 Gene3D - 135 449 - -
Cme01g01504 497 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 135 300 IPR036291 -
Cme01g01504 497 SMART gp_dh_n_7 135 280 IPR020828 GO:0051287
Cme01g01504 497 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 301 317 IPR020831 GO:0016620
Cme01g01504 497 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 274 292 IPR020831 GO:0016620
Cme01g01504 497 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 398 413 IPR020831 GO:0016620
Cme01g01504 497 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 239 252 IPR020831 GO:0016620
Cme01g01504 497 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 358 375 IPR020831 GO:0016620
Cme01g01504 497 ProSitePatterns Glyceraldehyde 3-phosphate dehydrogenase active site. 278 285 IPR020830 GO:0016620
Cme01g01504 497 PANTHER GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 135 449 IPR020831 GO:0016620
Cme01g01504 497 PANTHER GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 1 85 IPR020831 GO:0016620
Cme01g01504 497 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 279 442 - -
Cme01g01504 497 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 135 232 IPR020828 GO:0051287
Cme01g01504 497 Gene3D Dihydrodipicolinate Reductase; domain 2 278 444 - -
Cme01g01504 497 PANTHER GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE GAPCP1, CHLOROPLASTIC 135 449 - -
Cme01g01504 497 PANTHER GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE GAPCP1, CHLOROPLASTIC 1 85 - -
Cme01g01504 497 TIGRFAM GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 135 450 IPR006424 GO:0006006|GO:0016620|GO:0050661|GO:0051287
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g01504 K00134 GAPDH, gapA; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12] - csv:101215988 696.812
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme01g01504 Cme11g01634 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01504 Cme-Chr1:19812082 Cme12g01611 Cme-Chr12:23338297 3.75E-169 dispersed
Cme01g01504 Cme-Chr1:19812082 Cme11g01634 Cme-Chr11:24221845 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1147 Blo04g00463 Blo13g00601 . . . . . . . . . . . . Sed05g1836 Cpe04g00865 Cpe16g00709 Bhi05g01995 Tan02g0029 . Lac12g0041 Hepe02g0014 . . . . . . . . . . . . . . Csa07g01207 . Cme11g01634 . . . . Bpe15g00918 . . . Sed05g3308 . . . . . . Cpe15g00903 Cpe05g01033 Bhi10g00938 Tan05g0584 Cmetu11g0258 . Hepe08g0647 . . . . . . . . . . Csa06g01151 Chy11g01041 Cme01g01504
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002415 1 2 2 0 2 2 3 1 2 2 1 1 3 2 2 3 2 1 4 1 2 1 2 2 2 1 2 4 7 1 61
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme01g01504 Cme_Chr01 FPKM 103.509521 116.506027 110.114723 112.308128 110.781532 108.534332 116.647614 110.391937 110.970436 102.894852