Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g01504 ATGGCCGCAACTTCGCTCTTCAGATCCGCTCCGGCTGCTTCTTTTGTTCAATCATCGCCTTCATTCTCTTCTCCCGACCAATCTACGGCTTCGTGTGTTAATTTGAATTCTTTGAAGTTTCAATCGAGCATTTTCGGTGCTCAAGTTTCAAGCGGATCATCTTCCTTGCAGCTTCGTAGAAGCCATAATATTCAGCCCATTAAAGCTACAGCCACTGAACTGCCTCCCACAGTTCAAAGTACAATCGTCAATAATAAAGTACAAAAGTACTTCTTGATCCTAATAATTTTAATCTGTTGGCTTCTCAAGAATCAAGGAGCGGTGGAAAGACGAAGGTTGGAATCAATGCAATGGATCTTCCATCTTCTAAAGATGGCCGATTTTAAAGTTCGTTATTCATTGGTCACAGGTTTTGGACGTATTGGAAGGTTGGTATTGCGGAATGCAACCTCGAGGGATGATATTGATGTAGTTGCAGTTAATGATCCGTTTGTTGATGCAAAGTACATGGCATACATGTTCAAGTTTGATTCTACACATGGAAATTTCAAGGGCACGATTAAGGTCATGGATGATTCAACCTTGGAAATCAATGGGAAACAAATAAAGGTTTTAAGTAAAAGGGATCCAGCAGAAATTCCTTGGGGCGAGTTTGGGGCCGAGTTTGTTGTTGAATCATCTGGGGTTTTCACAACCACAAATAAGGCCTCTGCGCACTTGAAGGGTGGAGCCAGGAAAGTAGTCATATCAGCCCCATCAGCTGATGCACCTATGTTCGTTGTTGGAGTTAATGAGATGACATATAAGCCAAGCATGGATATTGTCTCAAATGCAAGTTGTACCACGAATTGCCTTGCTCCTCTTGCGAAGGTGGTTCATGAGGTTTTTGGTATCGCAGATGGTTTGATGACAACCGTGCATGCAACTACAGCTACTCAAAAAACTGTTGATGGGCCCTCGATGAAGGATTGGCGTGGGGGTCGTGGTGCTGCTCAAAATATCATCCCAAGTTCTACCGGTGCTGCAAAGGCTGTGGGAAAGGTTCTTCCAGAGCTCAACGAAAAACTTACAGGGATGGCATTTCGCGTTCCAACACCCAATGTATCTGTGGTGGACTTGACTTGTAGATTAGAGAAGAGTGCTTCTTATGAAGATGTCAAAGCTGCAATCAAATATGCCTCAGAAGGCCCACTCAAGGGTATCCTAGGTTACACGGATGAGGACGTTGTCTCCAATGATTTTGTCGGTGACTCAAGGTCAAGTATATTCGATGCAAAGGCCGGAATAGGTCTCAGCGATTCCTTCATGAAGCTTATCTCTTGGTATGACAACGAGTGGGGATACAGGTACTCACTCTCTCGTGAAGTCATTGGAAATGAGTGCCTACTCATCCGTTTTGTTTTTGGTAAATCTGACAATTATAATACTTGTTTACACAGCAACCGAGTACTGGACCTCATAGAGCACATGGCGTTGGTGGCAGCCAACAAGTGA 1494 43.91 MAATSLFRSAPAASFVQSSPSFSSPDQSTASCVNLNSLKFQSSIFGAQVSSGSSSLQLRRSHNIQPIKATATELPPTVQSTIVNNKVQKYFLILIILICWLLKNQGAVERRRLESMQWIFHLLKMADFKVRYSLVTGFGRIGRLVLRNATSRDDIDVVAVNDPFVDAKYMAYMFKFDSTHGNFKGTIKVMDDSTLEINGKQIKVLSKRDPAEIPWGEFGAEFVVESSGVFTTTNKASAHLKGGARKVVISAPSADAPMFVVGVNEMTYKPSMDIVSNASCTTNCLAPLAKVVHEVFGIADGLMTTVHATTATQKTVDGPSMKDWRGGRGAAQNIIPSSTGAAKAVGKVLPELNEKLTGMAFRVPTPNVSVVDLTCRLEKSASYEDVKAAIKYASEGPLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSDSFMKLISWYDNEWGYRYSLSREVIGNECLLIRFVFGKSDNYNTCLHSNRVLDLIEHMALVAANK 497
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19812082 19815890 - MELO3C012599.2.1 Cme01g01504 318480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g01504 497 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 285 442 IPR020829 GO:0016620
Cme01g01504 497 Gene3D - 135 449 - -
Cme01g01504 497 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 135 300 IPR036291 -
Cme01g01504 497 SMART gp_dh_n_7 135 280 IPR020828 GO:0051287
Cme01g01504 497 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 301 317 IPR020831 GO:0016620
Cme01g01504 497 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 274 292 IPR020831 GO:0016620
Cme01g01504 497 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 398 413 IPR020831 GO:0016620
Cme01g01504 497 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 239 252 IPR020831 GO:0016620
Cme01g01504 497 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 358 375 IPR020831 GO:0016620
Cme01g01504 497 ProSitePatterns Glyceraldehyde 3-phosphate dehydrogenase active site. 278 285 IPR020830 GO:0016620
Cme01g01504 497 PANTHER GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 135 449 IPR020831 GO:0016620
Cme01g01504 497 PANTHER GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 1 85 IPR020831 GO:0016620
Cme01g01504 497 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 279 442 - -
Cme01g01504 497 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 135 232 IPR020828 GO:0051287
Cme01g01504 497 Gene3D Dihydrodipicolinate Reductase; domain 2 278 444 - -
Cme01g01504 497 PANTHER GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE GAPCP1, CHLOROPLASTIC 135 449 - -
Cme01g01504 497 PANTHER GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE GAPCP1, CHLOROPLASTIC 1 85 - -
Cme01g01504 497 TIGRFAM GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 135 450 IPR006424 GO:0006006|GO:0016620|GO:0050661|GO:0051287
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme01g01504 Cme11g01634 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01504 Cme-Chr1:19812082 Cme12g01611 Cme-Chr12:23338297 3.75E-169 dispersed
Cme01g01504 Cme-Chr1:19812082 Cme11g01634 Cme-Chr11:24221845 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g01504 K00134 - csv:101215988 696.812