Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g01511 ATGGCTAATGATTGTATTGGCGAGGAAGTTGAGAAGATGGTCGCTGAATTGCCCGAGGGAGGTGTATTGCTGCTTGAAAACGTGAGGTTTTACAAGGAGGAAGAGAAGAACGACCCTGAGTTTGCCAAGAAGTTGGCTTCTCTTGCAGATCTCTATGTTAACGATGCCTTTGGAACTGCTCACAGAGCCCACGCTTCCACTGAGGGTGTGGCTAAGTACTTGAAACCTTCTGTTGCTGGTTTCCTTATGCAGAAGGAACTTGACTACTTGGTCGGAGCTGTGTCTAATCCTAAGAGACCATTTGCTGCAATTGTTGGTGGTTCAAAGGTGTCTTCAAAGATTGGAGTGATTGAATCCTTGTTGGAAAAGGTTAATCTTCTTTTCCTTGGTGGAGGAATGATCTTTACCTTCTACAAGGCACAAGGACTCGCAGTGGGTAAATCACTTGTGGAAGAAGACAAGCTGGACCTTGCTACCTCGCTCATTGAGAAGGCAAAAGCCAAGGGAGTTTCTCTTTTGCTTCCAACCGACGTAGTGGTAGCAGATAAATTTGCTGCTGATGCTGACAGCAAGGTTGTGGCAGCATCAAGTATTCCAGATGGCTGGATGGGTTTGGATATTGGACCTGATTCTATCAAGAGTTTTGGTGAAGCTTTGGATTCTACCCAAACCATTATTTGGAATGGACCTATGGGAGTGTTCGAGTTTGACAAGTTTGCGGCCGGAACGGAGGCTATTGCGAAGAAGTTGGCAGAGCTGAGTGGAAAGGGAGTTACCACCATAATTGGAGGAGGCGACTCTGTTGCGGCTGTTGAGAAGGTTGGACTTGCGGATAAGATGAGCCACATCTCCACTGGTGGTGGTGCCAGTTTAGAGCTTCTTGAAGGAAAAACGCTTCCCGGCGTCAGTGCTCTTGACGATGCTTGA 927 47.14 MANDCIGEEVEKMVAELPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVAKYLKPSVAGFLMQKELDYLVGAVSNPKRPFAAIVGGSKVSSKIGVIESLLEKVNLLFLGGGMIFTFYKAQGLAVGKSLVEEDKLDLATSLIEKAKAKGVSLLLPTDVVVADKFAADADSKVVAASSIPDGWMGLDIGPDSIKSFGEALDSTQTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVSALDDA 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 19904572 19907870 - MELO3C012604.2.1 Cme01g01511 318487

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g01511 308 Gene3D - 94 307 IPR015824 GO:0004618|GO:0006096
Cme01g01511 308 Gene3D - 1 91 IPR015824 GO:0004618|GO:0006096
Cme01g01511 308 Pfam Phosphoglycerate kinase 2 297 IPR001576 GO:0004618|GO:0006096
Cme01g01511 308 PRINTS Phosphoglycerate kinase family signature 224 249 IPR001576 GO:0004618|GO:0006096
Cme01g01511 308 PRINTS Phosphoglycerate kinase family signature 283 300 IPR001576 GO:0004618|GO:0006096
Cme01g01511 308 PRINTS Phosphoglycerate kinase family signature 48 70 IPR001576 GO:0004618|GO:0006096
Cme01g01511 308 PRINTS Phosphoglycerate kinase family signature 20 35 IPR001576 GO:0004618|GO:0006096
Cme01g01511 308 PRINTS Phosphoglycerate kinase family signature 102 121 IPR001576 GO:0004618|GO:0006096
Cme01g01511 308 PRINTS Phosphoglycerate kinase family signature 79 101 IPR001576 GO:0004618|GO:0006096
Cme01g01511 308 PRINTS Phosphoglycerate kinase family signature 260 271 IPR001576 GO:0004618|GO:0006096
Cme01g01511 308 PANTHER PHOSPHOGLYCERATE KINASE 1 308 IPR001576 GO:0004618|GO:0006096
Cme01g01511 308 SUPERFAMILY Phosphoglycerate kinase 2 307 IPR036043 GO:0004618|GO:0006096
Cme01g01511 308 PANTHER PHOSPHOGLYCERATE KINASE, CYTOSOLIC 1 308 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g01511 K00927 PGK, pgk; phosphoglycerate kinase [EC:2.7.2.3] - csv:101215513 565.074
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01511 Cme-Chr1:19904572 Cme04g02518 Cme-Chr4:31484509 6.03E-42 dispersed
Cme01g01511 Cme-Chr1:19904572 Cme11g01630 Cme-Chr11:24175798 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1133 . . . . . . Bma08g00819 . . . . . . . . . Cpe16g00710 Bhi05g01997 . . . . . . . . . . . . . . . . . . . . . . . . . Bpe15g00916 . . Bma12g00579 . . . . . . . . Cpe05g01034 . . . . . . . . . . . . . . . Csa06g01152 . Cme01g01511
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001509 2 3 3 3 3 2 4 2 2 2 2 2 3 2 2 4 2 4 4 1 2 2 2 2 2 1 2 3 2 2 72
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme01g01511 Cme_Chr01 FPKM 1.188811 1.05352 1.73429 2.130521 1.325647 0.0 1.076118 1.248396 1.479532 1.095657