Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g01524 ATGGCGTCTTCTTCTTTAGGTTTCATCTTTGTTCTTTGTGCAATTGTTTCCATCGTGAGCCACCTGATTATTTCGTCTCAAGCTCAAAATTCAACACAACCCATCACCGATCCTGATCAAGCAAGAGCTTTGAATTCCATATTTAGACAATGGCGAATTTCGGCACCATCAGGGGCATGGAATATAAGCGGGAATCTGTGCAGTGGGAGGGCAGTCGACAGTACGACCCGCATCGACAGTAATGGAAACCTCAATCCTCTTATAAAATGTGATTGCCCAGCCAACGGCGGTGCTACTTGCCTCATTACTCAACTGCACGTTTATGCAATAAATGTTGTTGGTGTACTCCCACCAGAGCTGTGGACATTGACTTCCCTCACATATCTGAAGCTGGATCAAAATTTCTTGACAGGAACACTATCTGCATCTGTTGGTAATCTCTCAGAATTGCGGACCCTGAGCCTGGGCATTAATGGGTTATCAGGGGAACTTCCCAAGGAACTTGGATCTCTTTCTAAACTGGAACTATTAGCATTGGGGTCCAACAATTTCTCCGGTCCCTTACCGTCAGAGCTTGGAAATCTTTCTATGTTAAGGGAACTATACATTGATAGCTCTGGAGTTTCGGGTGGTATTCCTCCATCATTTTCAAGTCTAAGAAACTTGGAGAAAGTATGGGCATCGGACAATGAATTCACTGGCAGAATACCTGATTTCATCGGGAACTGGACAAGGCTCACAGTTTTGAGGTTTCAAGGAAACTCTTTTACAGGTCCCATACCATCGACATTTTCAAACTTGACATCTTTGACTGAGTTGAGAATAGGTGATTTATCCAATGGGAGCTCTTCTCTGGCATTCATCAGTAAAATGACATCTCTAACTATCCTGGTGCTGAGAAATAATAATATTACTGGTTCAATTCCATCCAACATTGGAGAATTTCGTAGACTTGCCCAGCTGGACTTGAGCTTCAACAACTTGACAGGAGAGATTCCAAGCTCACTTTTCAGTTTGAGCTCACTATCACACTTGATCCTTGGAAATAATAAGTTAACTGGGACCCTACCTACACAGAAGAGTGAATCACTTCTAAATATAGACTTGTCATATAATGATTTATCAGGGAGCTTTCCTGCTTGGATTGACCAGCAAAACTTACAGCTAAATTTAGTTGTCAACAATTTCACAATTGAAAGTGGCAGTATCAGTCGTTTGCCTTCTGGATTGAATTGTCTTCAACGCAACTTTCCTTGTAATCGAGACCGTCCAATATATTCTGATTTTGGGATCAAGTGTGGAGGTCCACAGATCAGAAGTTCATCAGGGGTTTTGTTTGAAAGGGAAAATGAGGCCCTTGGTCCTGCTACGTACTTTGTCACTGATTCACAGAGGTGGGCCGTTAGTAATACTGGATACTTTACTGGGACCAGCAATCCTGAATACACCAGCAATACGCCGGCTCAATTCCCGAACACCATCGACACAGAACTTTATCAGACACAACGACTATCTGCTTCATCATTGAGATACTATGGACTAGGGCTTGAGAATGGAAACTACACTGTGAACCTTCATTTTGCGGAAATAGCTTTCCCAGATTCAAATACATGGCAAAGCCGTGGGAGGCGTCTCTTTGATATATATATACAGGGAAATCGTGTGCTACAGAATTTTGATATTAGAAAGGAGGCAGGTGGGTCTTTCCTTGCTGTCAGAAGGAATTTTACTGCTGAAGTTACAGAAAACTTCCTGGAAATTCATCTCTTTTGGGCGGGAAAAGGTACTTGCTGCATACCCGATCAGGGTGATTTTGGACCTGCTGTTTCAGCCATCAGCGCTACCCCAGATTTTGTACCAACTGTCCGTAACACACCTCCAAGTACTAAGGAGACTAGAACGGGCCTAATTGTAGGGCTTGTTGTGGGTTTAGGATCTGTTTTATTCCTGATTGTTGGCGCAGTATTCTTTGTTGTTCAGAGAAGGAAAAGGCGTCGTGCCTATGAAGATGAAGAGCTCCTAGGAATAGACACTAGACCGTACACTTTTAGTTATTCTGAACTAAGGGGTGCTACAAATGACTTCAATTCATCCAACAAACTTGGCGAGGGAGGATTTGGACCTGTTTACAAGGGAACATTAAATGATGGAAGAGTGGTTGCTGTGAAGCAACTTTCAGTGGCATCCCACCAAGGAAAGAGCCAGTTTGTTGCTGAGATCGCTACAATATCTGCAGTGCAACATCGTAACCTTGTGAAATTATATGGATGTTGCATTGAGGCCGATAAACGTCTCCTTGTTTATGAGTTTCTTGAGAACAAAAGTCTTGACCAAGCATTATTTGGTAAGGAATCTGTATCCAATTTTCTGGCTGTTGAAAACAAAGATGGACAAAAACATTTCGTTATTGATTGGCCAACACGGTTTGAGATATGCGTGGGTGTCGCAAGGGGTCTCACTTACCTTCATGAGGAATCGAGACTTCGCATTGTGCACAGAGATGTTAAGGCAAGTAACATCCTACTTGATGGTAATCTGATACCCAAAATTTCAGATTTTGGGTTAGCCAAACTTTATGATGACAAAAAGACTCATATAAGCACCCGTGTTGCTGGTACAATTGGTTATCTTGCACCCGAGTATGCCATGCGTGGCCACCTTACGGAGAAGGCTGATGTCTTCGGATTTGGTGTTGTGGCTCTTGAAATTGTTAGTGGAAGGCCAAATTCAGACCCAAGCTTAGATCAAGACAAAATTTATCTTCTCGAATGGGCATGGTACCTCCACGAAAACAACTGTGAACTTGAGATGGTGGATTCTGAATTATCAGAGTTCAGCAAGGAGGAAGTAAAAAGGGTGATTGGTGTAGCTCTTCTGTGCACTCAAACATCCCCAGGTCTTCGACCATCGATGTCCCGTGTGGTGGCAATGCTGACTGGAGACATTGAAGTGGCCACTGTAACTTCCAAACCAGGTTACCTGACAGATTGGAAATTTGAGGACATTACAAGCTTTATAGATACTCCATCAACTGAAGAACCTGATACCGGTCGTTATGCATCTACAAGTTCAAGTATCATTGATACGAAGCACTCGCCAGCCAACGCTTCTGAACCAATGCTTCGTGGATTATTAGGAGAGGGTAGATGA 3150 43.05 MASSSLGFIFVLCAIVSIVSHLIISSQAQNSTQPITDPDQARALNSIFRQWRISAPSGAWNISGNLCSGRAVDSTTRIDSNGNLNPLIKCDCPANGGATCLITQLHVYAINVVGVLPPELWTLTSLTYLKLDQNFLTGTLSASVGNLSELRTLSLGINGLSGELPKELGSLSKLELLALGSNNFSGPLPSELGNLSMLRELYIDSSGVSGGIPPSFSSLRNLEKVWASDNEFTGRIPDFIGNWTRLTVLRFQGNSFTGPIPSTFSNLTSLTELRIGDLSNGSSSLAFISKMTSLTILVLRNNNITGSIPSNIGEFRRLAQLDLSFNNLTGEIPSSLFSLSSLSHLILGNNKLTGTLPTQKSESLLNIDLSYNDLSGSFPAWIDQQNLQLNLVVNNFTIESGSISRLPSGLNCLQRNFPCNRDRPIYSDFGIKCGGPQIRSSSGVLFERENEALGPATYFVTDSQRWAVSNTGYFTGTSNPEYTSNTPAQFPNTIDTELYQTQRLSASSLRYYGLGLENGNYTVNLHFAEIAFPDSNTWQSRGRRLFDIYIQGNRVLQNFDIRKEAGGSFLAVRRNFTAEVTENFLEIHLFWAGKGTCCIPDQGDFGPAVSAISATPDFVPTVRNTPPSTKETRTGLIVGLVVGLGSVLFLIVGAVFFVVQRRKRRRAYEDEELLGIDTRPYTFSYSELRGATNDFNSSNKLGEGGFGPVYKGTLNDGRVVAVKQLSVASHQGKSQFVAEIATISAVQHRNLVKLYGCCIEADKRLLVYEFLENKSLDQALFGKESVSNFLAVENKDGQKHFVIDWPTRFEICVGVARGLTYLHEESRLRIVHRDVKASNILLDGNLIPKISDFGLAKLYDDKKTHISTRVAGTIGYLAPEYAMRGHLTEKADVFGFGVVALEIVSGRPNSDPSLDQDKIYLLEWAWYLHENNCELEMVDSELSEFSKEEVKRVIGVALLCTQTSPGLRPSMSRVVAMLTGDIEVATVTSKPGYLTDWKFEDITSFIDTPSTEEPDTGRYASTSSSIIDTKHSPANASEPMLRGLLGEGR 1049
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 20193869 20206934 + MELO3C012618.2.1 Cme01g01524 318500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g01524 1049 Gene3D Ribonuclease Inhibitor 280 405 IPR032675 -
Cme01g01524 1049 CDD STKc_IRAK 701 980 - -
Cme01g01524 1049 ProSiteProfiles Protein kinase domain profile. 695 984 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme01g01524 1049 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 139 1028 - -
Cme01g01524 1049 Gene3D Phosphorylase Kinase; domain 1 656 770 - -
Cme01g01524 1049 Pfam Protein tyrosine and serine/threonine kinase 698 977 IPR001245 GO:0004672|GO:0006468
Cme01g01524 1049 Gene3D - 429 615 - -
Cme01g01524 1049 SUPERFAMILY L domain-like 102 403 - -
Cme01g01524 1049 MobiDBLite consensus disorder prediction 1008 1032 - -
Cme01g01524 1049 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 139 1028 - -
Cme01g01524 1049 MobiDBLite consensus disorder prediction 1008 1049 - -
Cme01g01524 1049 SUPERFAMILY Protein kinase-like (PK-like) 678 1012 IPR011009 -
Cme01g01524 1049 Pfam Malectin domain 429 612 IPR021720 -
Cme01g01524 1049 SMART serkin_6 695 978 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme01g01524 1049 Pfam Leucine rich repeat 293 352 IPR001611 GO:0005515
Cme01g01524 1049 Gene3D Ribonuclease Inhibitor 60 279 IPR032675 -
Cme01g01524 1049 ProSitePatterns Serine/Threonine protein kinases active-site signature. 830 842 IPR008271 GO:0004672|GO:0006468
Cme01g01524 1049 Gene3D Transferase(Phosphotransferase) domain 1 772 989 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01524 Cme-Chr1:20193869 Cme05g00309 Cme-Chr5:2296795 0 dispersed
Cme02g01636 Cme-Chr2:23513142 Cme01g01524 Cme-Chr1:20193869 3.40E-93 dispersed
Cme10g01751 Cme-Chr10:24865852 Cme01g01524 Cme-Chr1:20193869 9.84E-33 dispersed
Cme12g00002 Cme-Chr12:55338 Cme01g01524 Cme-Chr1:20193869 9.60E-94 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64614 PF07714 PK_Tyr_Ser-Thr 4.20E-44 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g01524 - - csv:101212465 1858.96