Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g01530 ATGTCCGTACTGATTGTAACCAGTCTGGGGGACATTGTGATCGACCTACACACCGATATGTGCCCCTTGACTTCCAAGAATTTCCTGAAGCTCTGCAAAATTAAGTATTACAATGGGTGTCTGTTTCATACAATACAGAAGGACTTTACTGCTCAGACTGGTGACCCCACTGGCACGGGGACTGGTGGCGACTCAATCTATAAATTTCTCTATGGGGACCAGGCTCGATTTTTCAGTGATGAAATTCGTCTTGATTTAAAGCATTCTAAGACCGGCACTGTTGCAATGGCCAGTGCTGGGGAAAATCTTAATGCTTCTCAGTTTTATTTTACCTTGCGTGATGATCTCGAGTACCTTGATGGCAAGCACACTGTCTTTGGAGAGGTTGCTGAAGGACTAGACACCTTGACTAGGATTAATGAAGCCTATGCAGATGAGAAGGGCAGGCCATACAAAAATATTCGAATCAAGCATACTTATATCCTGGATGATCCATTTGATGATCCGCCACAGTTAGCTGAGCTCATTCCAGATTCTTCTCCTGATGGGAAACCAAAAGATGAGGTTGTTGATGAGGTGCGACTAGAAGATGATTGGGTGCCACTGGATGAGCAATTAGGTCCAGAAGAACTTGAGGAGGTTTTTCGAGCAAAGGAAGCTCACTCCAGAGCTGTCGTGCTTGAAACTATCGGAGATATTCCTGATGCTGAGATAAAGCCTCCTGATAACGTGTTATTTGTTTGTAAACTGAATCCAGTCACAGAAGATGAGGACTTGCATACAATCTTCTCTCGTTTTGGCACTGTATTATCGGCTGAAGTCATCCGTGATTACAAGACTGGAGATAGTTTATGCTATGCCTTCATAGAGTTTGAGACCAAAGAGGCATGTGAACAAGCATATTTTAAGATGGACAATGCTCTGATTGATGATAGAAGGATACATGTGGATTTCAGTCAAAGTGTTGCAAAACTTTGGTCCCAATACCGACGCAAAGATTACACAGCAGATAAAGGTAGAGGTTGCTTTAAATGTGGCGCTCCTGACCATATGGCTAGGGATTGCACCGGCGGTTCTACAAAGTTCATCTTGAAGGATGATAACGTACAGCATGGTGGAGATGAATCAAGGTATGACTTTGTTTTTGATGAGGACAATGGAAATAACCAGAGGAAAGAAAGGAGACGTCGAGATCATGATCATGATAGGCATGTTGAGATGCCAAATGCTAGGAACCAAAGCCCCACTGGGCGTGAGCGATATGGAGAAAAGAAGGGTGCAAGTGATAGGAATGAGTCAAATGACAGAAATAGATTCAGAGGGAGAGAGATGCATCGAGAAAATAAGGACAGACAATCCCGTGGAGACAGAGATGATTTTGAAGACCGAAGGGACCATGAAAGACAAAGAAAGAGACAGAATGAGAGAGATGACCACAAGAAAAAGGAGTTGGATTATAAAAAAATATCTTTGAATGATCATGACGCATATGGCAACCGGGATTATGAGGCTAATAGAAACAGAAGTGGAAGGGAATATAGTGACAGGTCAGAGAAGAGGAAGGATGAGGAGTTTTATGGCAGAAGGCATGCAGATAAGAGTAGCCATGAAGAAAAAAGGCAAGATATTCGAGAATATAGGAAGGATGAACGAGGTTATGGAAAAAGAAATTTCGACAGTGAAAAAGCTGAGATGAAAGATGGGCCACATTATAAAAAAAGATATACAGATGATGACGGTTACAAGGACAGGAGAGATGATGGTTACAAGGAAAGGAGAGAAGAGCGAGAACCCAGAAGACGAAGCAGGGAAGAGTACAAGGAAAGGTAA 1830 42.68 MSVLIVTSLGDIVIDLHTDMCPLTSKNFLKLCKIKYYNGCLFHTIQKDFTAQTGDPTGTGTGGDSIYKFLYGDQARFFSDEIRLDLKHSKTGTVAMASAGENLNASQFYFTLRDDLEYLDGKHTVFGEVAEGLDTLTRINEAYADEKGRPYKNIRIKHTYILDDPFDDPPQLAELIPDSSPDGKPKDEVVDEVRLEDDWVPLDEQLGPEELEEVFRAKEAHSRAVVLETIGDIPDAEIKPPDNVLFVCKLNPVTEDEDLHTIFSRFGTVLSAEVIRDYKTGDSLCYAFIEFETKEACEQAYFKMDNALIDDRRIHVDFSQSVAKLWSQYRRKDYTADKGRGCFKCGAPDHMARDCTGGSTKFILKDDNVQHGGDESRYDFVFDEDNGNNQRKERRRRDHDHDRHVEMPNARNQSPTGRERYGEKKGASDRNESNDRNRFRGREMHRENKDRQSRGDRDDFEDRRDHERQRKRQNERDDHKKKELDYKKISLNDHDAYGNRDYEANRNRSGREYSDRSEKRKDEEFYGRRHADKSSHEEKRQDIREYRKDERGYGKRNFDSEKAEMKDGPHYKKRYTDDDGYKDRRDDGYKERREEREPRRRSREEYKER 609
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 20244408 20250428 - MELO3C012622.2.1 Cme01g01530 318506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g01530 609 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 245 315 IPR000504 GO:0003723
Cme01g01530 609 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 7 161 IPR002130 GO:0000413|GO:0003755
Cme01g01530 609 ProSiteProfiles Zinc finger CCHC-type profile. 342 355 IPR001878 GO:0003676|GO:0008270
Cme01g01530 609 MobiDBLite consensus disorder prediction 375 609 - -
Cme01g01530 609 SMART c2hcfinal6 341 357 IPR001878 GO:0003676|GO:0008270
Cme01g01530 609 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 243 321 IPR000504 GO:0003723
Cme01g01530 609 CDD cyclophilin_RRM 4 169 IPR035538 -
Cme01g01530 609 SUPERFAMILY Cyclophilin-like 1 178 IPR029000 -
Cme01g01530 609 Pfam Zinc knuckle 340 356 IPR001878 GO:0003676|GO:0008270
Cme01g01530 609 Gene3D - 200 325 IPR012677 -
Cme01g01530 609 Gene3D - 1 172 IPR029000 -
Cme01g01530 609 SUPERFAMILY RNA-binding domain, RBD 229 331 IPR035979 GO:0003676
Cme01g01530 609 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 4 159 IPR002130 GO:0000413|GO:0003755
Cme01g01530 609 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-LIKE 4 1 488 IPR035542 -
Cme01g01530 609 MobiDBLite consensus disorder prediction 417 609 - -
Cme01g01530 609 CDD RRM_PPIL4 240 322 - -
Cme01g01530 609 Gene3D - 335 409 - -
Cme01g01530 609 MobiDBLite consensus disorder prediction 375 408 - -
Cme01g01530 609 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 16 31 IPR002130 GO:0000413|GO:0003755
Cme01g01530 609 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 42 54 IPR002130 GO:0000413|GO:0003755
Cme01g01530 609 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 92 107 IPR002130 GO:0000413|GO:0003755
Cme01g01530 609 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 121 136 IPR002130 GO:0000413|GO:0003755
Cme01g01530 609 SMART rrm1_1 244 317 IPR000504 GO:0003723
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01530 Cme-Chr1:20244408 Cme08g00648 Cme-Chr8:4244860 1.22E-32 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g01530 K12735 - csv:101212221 1102.43