Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g01530 ATGTCCGTACTGATTGTAACCAGTCTGGGGGACATTGTGATCGACCTACACACCGATATGTGCCCCTTGACTTCCAAGAATTTCCTGAAGCTCTGCAAAATTAAGTATTACAATGGGTGTCTGTTTCATACAATACAGAAGGACTTTACTGCTCAGACTGGTGACCCCACTGGCACGGGGACTGGTGGCGACTCAATCTATAAATTTCTCTATGGGGACCAGGCTCGATTTTTCAGTGATGAAATTCGTCTTGATTTAAAGCATTCTAAGACCGGCACTGTTGCAATGGCCAGTGCTGGGGAAAATCTTAATGCTTCTCAGTTTTATTTTACCTTGCGTGATGATCTCGAGTACCTTGATGGCAAGCACACTGTCTTTGGAGAGGTTGCTGAAGGACTAGACACCTTGACTAGGATTAATGAAGCCTATGCAGATGAGAAGGGCAGGCCATACAAAAATATTCGAATCAAGCATACTTATATCCTGGATGATCCATTTGATGATCCGCCACAGTTAGCTGAGCTCATTCCAGATTCTTCTCCTGATGGGAAACCAAAAGATGAGGTTGTTGATGAGGTGCGACTAGAAGATGATTGGGTGCCACTGGATGAGCAATTAGGTCCAGAAGAACTTGAGGAGGTTTTTCGAGCAAAGGAAGCTCACTCCAGAGCTGTCGTGCTTGAAACTATCGGAGATATTCCTGATGCTGAGATAAAGCCTCCTGATAACGTGTTATTTGTTTGTAAACTGAATCCAGTCACAGAAGATGAGGACTTGCATACAATCTTCTCTCGTTTTGGCACTGTATTATCGGCTGAAGTCATCCGTGATTACAAGACTGGAGATAGTTTATGCTATGCCTTCATAGAGTTTGAGACCAAAGAGGCATGTGAACAAGCATATTTTAAGATGGACAATGCTCTGATTGATGATAGAAGGATACATGTGGATTTCAGTCAAAGTGTTGCAAAACTTTGGTCCCAATACCGACGCAAAGATTACACAGCAGATAAAGGTAGAGGTTGCTTTAAATGTGGCGCTCCTGACCATATGGCTAGGGATTGCACCGGCGGTTCTACAAAGTTCATCTTGAAGGATGATAACGTACAGCATGGTGGAGATGAATCAAGGTATGACTTTGTTTTTGATGAGGACAATGGAAATAACCAGAGGAAAGAAAGGAGACGTCGAGATCATGATCATGATAGGCATGTTGAGATGCCAAATGCTAGGAACCAAAGCCCCACTGGGCGTGAGCGATATGGAGAAAAGAAGGGTGCAAGTGATAGGAATGAGTCAAATGACAGAAATAGATTCAGAGGGAGAGAGATGCATCGAGAAAATAAGGACAGACAATCCCGTGGAGACAGAGATGATTTTGAAGACCGAAGGGACCATGAAAGACAAAGAAAGAGACAGAATGAGAGAGATGACCACAAGAAAAAGGAGTTGGATTATAAAAAAATATCTTTGAATGATCATGACGCATATGGCAACCGGGATTATGAGGCTAATAGAAACAGAAGTGGAAGGGAATATAGTGACAGGTCAGAGAAGAGGAAGGATGAGGAGTTTTATGGCAGAAGGCATGCAGATAAGAGTAGCCATGAAGAAAAAAGGCAAGATATTCGAGAATATAGGAAGGATGAACGAGGTTATGGAAAAAGAAATTTCGACAGTGAAAAAGCTGAGATGAAAGATGGGCCACATTATAAAAAAAGATATACAGATGATGACGGTTACAAGGACAGGAGAGATGATGGTTACAAGGAAAGGAGAGAAGAGCGAGAACCCAGAAGACGAAGCAGGGAAGAGTACAAGGAAAGGTAA 1830 42.68 MSVLIVTSLGDIVIDLHTDMCPLTSKNFLKLCKIKYYNGCLFHTIQKDFTAQTGDPTGTGTGGDSIYKFLYGDQARFFSDEIRLDLKHSKTGTVAMASAGENLNASQFYFTLRDDLEYLDGKHTVFGEVAEGLDTLTRINEAYADEKGRPYKNIRIKHTYILDDPFDDPPQLAELIPDSSPDGKPKDEVVDEVRLEDDWVPLDEQLGPEELEEVFRAKEAHSRAVVLETIGDIPDAEIKPPDNVLFVCKLNPVTEDEDLHTIFSRFGTVLSAEVIRDYKTGDSLCYAFIEFETKEACEQAYFKMDNALIDDRRIHVDFSQSVAKLWSQYRRKDYTADKGRGCFKCGAPDHMARDCTGGSTKFILKDDNVQHGGDESRYDFVFDEDNGNNQRKERRRRDHDHDRHVEMPNARNQSPTGRERYGEKKGASDRNESNDRNRFRGREMHRENKDRQSRGDRDDFEDRRDHERQRKRQNERDDHKKKELDYKKISLNDHDAYGNRDYEANRNRSGREYSDRSEKRKDEEFYGRRHADKSSHEEKRQDIREYRKDERGYGKRNFDSEKAEMKDGPHYKKRYTDDDGYKDRRDDGYKERREEREPRRRSREEYKER 609
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 20244408 20250428 - MELO3C012622.2.1 Cme01g01530 318506

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g01530 609 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 245 315 IPR000504 GO:0003723
Cme01g01530 609 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 7 161 IPR002130 GO:0000413|GO:0003755
Cme01g01530 609 ProSiteProfiles Zinc finger CCHC-type profile. 342 355 IPR001878 GO:0003676|GO:0008270
Cme01g01530 609 MobiDBLite consensus disorder prediction 375 609 - -
Cme01g01530 609 SMART c2hcfinal6 341 357 IPR001878 GO:0003676|GO:0008270
Cme01g01530 609 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 243 321 IPR000504 GO:0003723
Cme01g01530 609 CDD cyclophilin_RRM 4 169 IPR035538 -
Cme01g01530 609 SUPERFAMILY Cyclophilin-like 1 178 IPR029000 -
Cme01g01530 609 Pfam Zinc knuckle 340 356 IPR001878 GO:0003676|GO:0008270
Cme01g01530 609 Gene3D - 200 325 IPR012677 -
Cme01g01530 609 Gene3D - 1 172 IPR029000 -
Cme01g01530 609 SUPERFAMILY RNA-binding domain, RBD 229 331 IPR035979 GO:0003676
Cme01g01530 609 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 4 159 IPR002130 GO:0000413|GO:0003755
Cme01g01530 609 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-LIKE 4 1 488 IPR035542 -
Cme01g01530 609 MobiDBLite consensus disorder prediction 417 609 - -
Cme01g01530 609 CDD RRM_PPIL4 240 322 - -
Cme01g01530 609 Gene3D - 335 409 - -
Cme01g01530 609 MobiDBLite consensus disorder prediction 375 408 - -
Cme01g01530 609 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 16 31 IPR002130 GO:0000413|GO:0003755
Cme01g01530 609 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 42 54 IPR002130 GO:0000413|GO:0003755
Cme01g01530 609 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 92 107 IPR002130 GO:0000413|GO:0003755
Cme01g01530 609 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 121 136 IPR002130 GO:0000413|GO:0003755
Cme01g01530 609 SMART rrm1_1 244 317 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g01530 K12735 PPIL4; peptidyl-prolyl cis-trans isomerase-like 4 [EC:5.2.1.8] - csv:101212221 1102.43
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01530 Cme-Chr1:20244408 Cme08g00648 Cme-Chr8:4244860 1.22E-32 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1086 . . . . . . Bma08g00813 . . . . . . . . Cpe04g00858 . Bhi05g02021 . . . . . . . . . . . . . . . . . . Csa07g01188 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy01g00875 Cme01g01530
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009344 0 6 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme01g01530 Cme_Chr01 FPKM 1.347895 1.221413 2.208151 2.018745 2.061554 2.48428 2.325923 1.063538 0.778361 1.071406