Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g01534 ATGGCATCGTCGGAGATGATGATGAGTGGGAGCTGCAAAAAGGGGAATGGTGCAGCCGCGCCGTGCGCTGCCTGCAAGCTTTTGCGGCGGCGGTGTGCTCACGACTGTGTGTTTGCTCCTTATTTTCCGGCGGATCATCCCCACAAATTCTCCAGTGTTCACAAAGTCTTTGGTGCTAGTAATGTCAGCAAATTGTTGCAGGAGTTGCCAGAGCAGCAACGGAGCGATGCAGTAAGTTCGATGGTATATGAGGCAAATGCAAGGATTCGAGATCCGGTGTACGGATGCGTGGGAACAATATCATGTCTACAACAGCAAGTGGATGCATTGCAGCAACAACTAGCAATAACACAGGCCCAACTGGTTCAATTGAAAATGGGGCAATTTACAACAACATCACAATCATCATCTAGTACAGATGACTTCCTTTCTCCTCCGCCCAATATCAATGTGGCCGCATCCTCATCATTATGGTCCTGCTAG 483 49.07 MASSEMMMSGSCKKGNGAAAPCAACKLLRRRCAHDCVFAPYFPADHPHKFSSVHKVFGASNVSKLLQELPEQQRSDAVSSMVYEANARIRDPVYGCVGTISCLQQQVDALQQQLAITQAQLVQLKMGQFTTTSQSSSSTDDFLSPPPNINVAASSSLWSC 160
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 20301579 20304319 - MELO3C012624.2.1 Cme01g01534 318510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g01534 160 ProSiteProfiles LOB domain profile. 20 121 IPR004883 -
Cme01g01534 160 PANTHER LOB DOMAIN-CONTAINING PROTEIN 3 11 138 - -
Cme01g01534 160 Pfam Lateral organ boundaries (LOB) domain 21 118 IPR004883 -
Cme01g01534 160 Coils Coil 100 120 - -
Cme01g01534 160 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 11 138 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01534 Cme-Chr1:20301579 Cme10g01432 Cme-Chr10:17308943 1.53E-56 dispersed
Cme11g00855 Cme-Chr11:11237721 Cme01g01534 Cme-Chr1:20301579 1.93E-21 transposed
Cme12g00980 Cme-Chr12:17143350 Cme01g01534 Cme-Chr1:20301579 4.65E-54 transposed
Cme01g01534 Cme-Chr1:20301579 Cme11g01593 Cme-Chr11:23718948 1.34E-29 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40764 PF03195 LOB 5.80E-43 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g01534 - - csv:101213100 287.73