Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g01543 ATGTCATCTGGAAGTAGTAGTACTTTGAATACAGAATTGTCAAAGAAAACACCCTTCCTTGGTTTGTCCCTATGGGTTTTGATCTGCTTATGTGTTGGTGCATTTATTGTTTTGATTCTTGGTATCTTATCTGTATGGGTGATGTTTCGAAGAAAAACAAGGAGATCCCCAGAAAACTTCTCTATTTCTCAAATACCAAATGTCTCAAAGGATATTAAGGTGGACAGAATTGCTACTCAATCCGCCCACCACAATCATCTCGAGAGCCTTTATATTTCTATTAATGATAAATCAAGTGAGAAGAATTCAGAGAAGATGATTGGTCATTTGGGTATGAGCAAGTCTAGTGATCCTGATAACATAAGTCAATGCAGCTCCAATTATCATCATGAAAGGGTTTTCAGCTCACATTCAGGAGAAGAAGGAAGCTCTGGTACTGTTAGAAAACAGTCTTCAATGTCATATGGAGGGTATGGAGGTGTTGTGACTGCCTCTCCTCTCGTTGGCTTGCCTGAAATTTCACATCTTGGTTGGGGTCACTGGTTTACACTCAGGGATCTAGAATTTGCCACAAATCGTTTCGCTGCAGACAATGTGCTTGGTGAAGGGGGTTATGGGGTTGTTTATAAAGGCAGACTGATAAATGGAACTGAGGTTGCTGTGAAGAAACTTCTCAATAATCTGGGACAAGCAGAGAAAGAATTTAGAGTTGAAGTGGAGGCCATTGGTCATGTAAGACACAAGAATCTCGTACGGCTCCTTGGCTATTGCATAGAAGGAGTTCATAGGATGCTGGTCTATGAATATGTGAACAATGGGAACTTGGAGCAATGGTTACATGGGGCTATGCGGCAACATGGCACCCTGACTTGGGAGGCCCGAATGAAGGTGCTTCTTGGCACTGCCAAGGCGCTAGCATATTTGCATGAAGCAATTGAACCAAAGGTTGTTCACAGAGACATAAAATCGAGCAATATCTTAATCGATGATGAATTTAATGCAAAGGTTTCAGATTTTGGATTGGCCAAACTTTTGGATGCAGGAGAGAGTCACATCACGACTAGAGTGATGGGAACATTTGGGTATGTGGCGCCAGAATATGCTAACACCGGCTTGTTAAATGAGAAGAGCGACATTTATAGCTTTGGTGTTCTCCTTCTAGAAGCAATCACAGGAAGGGACCCGGTGGACTATGGCCGTCCTGCTAATGAGGTTAATCTTGTTGAGTGGTTAAAAGTGATGGTTGGCACAAGGAGAGCTGAGGAAGTTATTGACCCAAGTCTTGAAACTAAACCCAGTACTCGAGCTTTGAAACGTGCCCTTCTGATTGCACTTAGGTGTGTGGATCCTGAGGCAGATAAGAGACCAAAAATGACCCAAGTTGTTAGGATGCTTGAAGCTGATGACTACCCATCCCGTGAGTTAAGGGCTAATGAGCATTACTCTACAATAGTCAAGGAACTTATTTCCATCTGGTTTATGGTCATGATCGGCGGAGCCAAAAGAGCAGCACAGCAAACTCAGAGATCGAATCCAGTCAAGGAGAGATCGGAAGTAAACCAGGGGAATCACAAAGCAGACCAGTAA 1587 42.97 MSSGSSSTLNTELSKKTPFLGLSLWVLICLCVGAFIVLILGILSVWVMFRRKTRRSPENFSISQIPNVSKDIKVDRIATQSAHHNHLESLYISINDKSSEKNSEKMIGHLGMSKSSDPDNISQCSSNYHHERVFSSHSGEEGSSGTVRKQSSMSYGGYGGVVTASPLVGLPEISHLGWGHWFTLRDLEFATNRFAADNVLGEGGYGVVYKGRLINGTEVAVKKLLNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGVHRMLVYEYVNNGNLEQWLHGAMRQHGTLTWEARMKVLLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDEFNAKVSDFGLAKLLDAGESHITTRVMGTFGYVAPEYANTGLLNEKSDIYSFGVLLLEAITGRDPVDYGRPANEVNLVEWLKVMVGTRRAEEVIDPSLETKPSTRALKRALLIALRCVDPEADKRPKMTQVVRMLEADDYPSRELRANEHYSTIVKELISIWFMVMIGGAKRAAQQTQRSNPVKERSEVNQGNHKADQ 528
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 20540304 20545244 + MELO3C012634.2.1 Cme01g01543 318519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g01543 528 Gene3D Phosphorylase Kinase; domain 1 176 269 - -
Cme01g01543 528 Coils Coil 214 234 - -
Cme01g01543 528 ProSitePatterns Protein kinases ATP-binding region signature. 200 223 IPR017441 GO:0005524
Cme01g01543 528 Gene3D Transferase(Phosphotransferase) domain 1 270 480 - -
Cme01g01543 528 SMART serkin_6 194 465 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme01g01543 528 CDD STKc_IRAK 200 466 - -
Cme01g01543 528 Pfam Protein kinase domain 197 463 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme01g01543 528 MobiDBLite consensus disorder prediction 504 528 - -
Cme01g01543 528 PANTHER OS01G0323000 PROTEIN 5 488 - -
Cme01g01543 528 SUPERFAMILY Protein kinase-like (PK-like) 178 479 IPR011009 -
Cme01g01543 528 ProSiteProfiles Protein kinase domain profile. 194 452 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme01g01543 528 PANTHER OS10G0497600 PROTEIN 5 488 - -
Cme01g01543 528 ProSitePatterns Serine/Threonine protein kinases active-site signature. 316 328 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01543 Cme-Chr1:20540304 Cme03g02062 Cme-Chr3:28105142 1.83E-180 dispersed
Cme06g01032 Cme-Chr6:7468679 Cme01g01543 Cme-Chr1:20540304 3.84E-15 dispersed
Cme01g01543 Cme-Chr1:20540304 Cme01g01552 Cme-Chr1:20596157 2.41E-31 proximal
Cme01g01553 Cme-Chr1:20596585 Cme01g01543 Cme-Chr1:20540304 7.99E-54 transposed
Cme05g01512 Cme-Chr5:24527311 Cme01g01543 Cme-Chr1:20540304 0 transposed
Cme11g02117 Cme-Chr11:28760979 Cme01g01543 Cme-Chr1:20540304 0 transposed
Cme01g01543 Cme-Chr1:20540304 Cme11g01574 Cme-Chr11:23333440 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64615 PF00069 Pkinase 7.20E-48 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g01543 - - csv:101212378 937.947