Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g01544 ATGTCAAATGATGAAGGGAAAAATGTGTACCAGCAGTATGATCCATTTCAATACAACCAATTGGATATGAACCGTTCGATCTTCCATCAACAAGCTGCAGCGGCGGCGTTGGATCCTGGCTTGATGAGTTTCACTAATTTCTTCGATACCAGCTCTTTGGATTATAATAGCCTGTCGAAGGCGTTCGATGTGTCGTGCTGTTCATCTCAAGTCATTTCTGCAGTGGACGACATGTCGAAAAAGAAGGCTTCAACGACAACCCCAAATTCTTCAGTGTCGTCTTCATCTAATGAAGCTGTAGTTGAAGAGGATTCAGTGAAGAGCAACAAATTAGAAGACATAAAAGGGCGGTGCGAGAATAAAGATGAAGAAAAGTCTAAGAAACAGAACAGCAATTTATCAAAAAAGAAAGAGAAACGGCCGAGGGAGCCCCGTTTTGCTTTCTTGACTAAGAGTGAGATTGATCATCTTGAAGATGGATATAGATGGAGAAAATATGGTCAGAAAGCAGTTAAAAATAGTCCTTACCCCAGAAGCTACTATAGATGCACCAGCCAAAAATGTGTAGTGAAAAAACGAGTTGAAAGATCATATCAAGATCCATCTGTGGTGATTACTACATATGAAGGCCAACACAACCACCATTGCCCAGCTACACTCCGAGGCCATTCTGCAGGAATCATGTCGTCTCCATTCTACGCATCGGCATCAACATCAGTAACAGCAGCCTCATCCGGGCCTACGCTTCCCCAAGAACTCTTCTCACATTTGTTACCAACCAATAACTGCCAAAACGACCCGGCCTCAATGATGTACCAAAATCTAAGCCTTCAACAACACCTTCAAATGCCTGATCATTACGGTTTGTTGCAAGATTTATTCACTCAAAAATAG 894 42.28 MSNDEGKNVYQQYDPFQYNQLDMNRSIFHQQAAAAALDPGLMSFTNFFDTSSLDYNSLSKAFDVSCCSSQVISAVDDMSKKKASTTTPNSSVSSSSNEAVVEEDSVKSNKLEDIKGRCENKDEEKSKKQNSNLSKKKEKRPREPRFAFLTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCVVKKRVERSYQDPSVVITTYEGQHNHHCPATLRGHSAGIMSSPFYASASTSVTAASSGPTLPQELFSHLLPTNNCQNDPASMMYQNLSLQQHLQMPDHYGLLQDLFTQK 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 20552695 20555425 - MELO3C012635.2.1 Cme01g01544 318520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g01544 297 MobiDBLite consensus disorder prediction 77 102 - -
Cme01g01544 297 SMART WRKY_cls 157 216 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme01g01544 297 PANTHER WRKY TRANSCRIPTION FACTOR 71-RELATED 19 295 - -
Cme01g01544 297 Gene3D WRKY domain 142 218 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cme01g01544 297 SUPERFAMILY WRKY DNA-binding domain 150 217 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cme01g01544 297 MobiDBLite consensus disorder prediction 103 147 - -
Cme01g01544 297 ProSiteProfiles WRKY domain profile. 152 217 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme01g01544 297 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 19 295 IPR044810 GO:0003700
Cme01g01544 297 Pfam WRKY DNA -binding domain 158 214 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme01g01544 297 MobiDBLite consensus disorder prediction 77 147 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01544 Cme-Chr1:20552695 Cme08g00164 Cme-Chr8:1148798 4.78E-58 dispersed
Cme03g01437 Cme-Chr3:23732372 Cme01g01544 Cme-Chr1:20552695 1.13E-46 transposed
Cme07g01545 Cme-Chr7:21319173 Cme01g01544 Cme-Chr1:20552695 3.53E-17 transposed
Cme01g01544 Cme-Chr1:20552695 Cme11g01573 Cme-Chr11:23318618 9.65E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40766 PF03106 WRKY 5.60E-25 CL0274 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g01544 - - csv:101211248 538.11