Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g01561 ATGAATGGTGTCACAGTAACAAATTCTGAACCAGACAACAACTCTGAATATGTTGAAGTTGATCCCACCGGAAGATATGGAAGATACAATGAAGTTCTTGGCAAAGGGGCGTCGAAGACAGTTTACAGAGCTTTCGATGAATACGATGGCATTGAAGTGGCATGGAATCAAGTAAAGCTTTGTGATTTTCTTCAAACTCCTGAAGATCTTGAAAGGCTGTACAGAGAAATCCATTTGTTGAAGACATTAAAACACAAAAACATAATGAAATTTTATTCTTCTTGGGTTGACACTGCTAATAGAAACATTAACTTTGTTACAGAGATGTTCACTTCTGGGACTCTTAGACAATATAGGTTGAAGCATAAGAAAGTGAATATCAGAGCTGTGAAGCATTGGTGTAGACAGATTTTAAAAGGGCTTCTCTATCTTCACAGCCATGATCCTCCTGTAATCCATAGAGACCTTAAATGTGATAATATTTTTGTAAATGGGAATCAAGGGGAAGTCAAAATTGGTGATCTTGGTCTTGCTGCTATTCTTCGTAAATCTTATGTAGCTCGATGTGTTGGAACACCAGAGTTTATGGCTCCAGAGATTTATGAAGAGGAGTATAATGAATTGGTTGATATATATTCTTTTGGAATGTGCATATTAGAGATGGTTACTTTTGAATATCCATACAGTGAATGCACCCACCCTGCTCAGATTTACAAGAAAGTTATCTCTGGGAAGAAACCAGATGCTTTGTATAAGGTAAAGGATCTTGAGGTTCGGTGTTTCGTCGAGAAGTGCTTGGCTACTGTGTCAAATAGGCTGTCAGCGAGGGAGCTTTTGAATGACCCTTTTCTTCAAATTGATGGTTGTGATTCTTTATTGAGGCCAATAGAGTACTATTCAGAATATGATGAAGTGAACAATTCCCTTATCAGAGGAGGGCCTCTTTATGGAATTTCTCATGGTCCTTTGGATAATGGGTATGTGAATTATTTTAGTCACGAGGCTGGGAATGGCTTGGATTACTGTCCGCTTGATAACGAAGTGAGTGAAATCGATCTTTTCTCCTGTCAAGAGGATGAGCATTTGGAAGATGTTGATATCACTATTAAAGGGAGAAGAAGAGGTGACGATGATATCTTTCTACGACTTCGGATTGTAGATAAAGAAGGTCGAATTCGAAACATCTACTTTCCCTTTGATTTAGAGAATGATAGTGCTTTGAGTGTTGCTAATGAGATGGTTTCTGAGCTTGACATTACTGATCAAGATGTGAAGAAGATTGCTGATATGATTGATGGTGAGATTGCTACATTGGTACCAGAGTGGACAAAGGGAAAAAGTTTAGAGGAAACTCCAAATTGCAGTGATTCTAATGTTTGTCACAATTGTGCTTTAAACAGTTCTCTTTTAGATTACGTTTCACCGCATAATCTTGCGGCGAAGAACCTGCACATTCTTCGGTGTTCTGAAGAACATGGTTGTGCTTCTATCCATGGACGATTTGAAGAGATTACGTATCAAGTTGAGGGGTCGGAACAATTCAATGGAGATGAAAACTTGCATAGAACAACAGAAAATTCAAGTGATATCCATTATGCCGATATTTGGGCACAACGAGATGGACCAGATGTAGTTTCTCAAGAATCTTTAGAAGCTTGCAATGAATCTAGAGCATCGGAACAACCGAAACTCGAGAAGGAAGAAAGTAATGTAAATATGGATGATAATGATCATCAAATGGAATTCCAAGCAAGAAACTCTAGCTCATCAAATCCTTCGCCGTCCTTTGTCGATGATCACGAGAACGAAATTCGACAAGAACTAAGATGGCTCAAGGCTAAATATCAAATACAATTAAGGGAGCTAAGAGATCAACAGTTAGGAGTCAAGACCAAATCTCTTAGCCTGCACCCTATTTCCAGCCTCACCGAGACTGATAACGGAGCTCCGGTATCTTTGCTTTTGCCAAACTTCAATGAAGCAGCAAATAATAAGATTGTCCAAACATCTCTCTCCTTTGGCAAGAATATCACTTCACATTCCCCCTATGATGCTGCTGATAACATTTTGGAAAACCAAACCTTTCAAGACGACAATGTCATTGTTGATGAGTCGAGTAGTACCGAGCTGATTGTTACTGCCAAGAGTTTCTATACAGGAGCATTGTTTCCACATTCTCTTCAAAGAGCAACCTCACTTCCCGTTGATGCTATAGACTTTTAG 2223 39.0 MNGVTVTNSEPDNNSEYVEVDPTGRYGRYNEVLGKGASKTVYRAFDEYDGIEVAWNQVKLCDFLQTPEDLERLYREIHLLKTLKHKNIMKFYSSWVDTANRNINFVTEMFTSGTLRQYRLKHKKVNIRAVKHWCRQILKGLLYLHSHDPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAILRKSYVARCVGTPEFMAPEIYEEEYNELVDIYSFGMCILEMVTFEYPYSECTHPAQIYKKVISGKKPDALYKVKDLEVRCFVEKCLATVSNRLSARELLNDPFLQIDGCDSLLRPIEYYSEYDEVNNSLIRGGPLYGISHGPLDNGYVNYFSHEAGNGLDYCPLDNEVSEIDLFSCQEDEHLEDVDITIKGRRRGDDDIFLRLRIVDKEGRIRNIYFPFDLENDSALSVANEMVSELDITDQDVKKIADMIDGEIATLVPEWTKGKSLEETPNCSDSNVCHNCALNSSLLDYVSPHNLAAKNLHILRCSEEHGCASIHGRFEEITYQVEGSEQFNGDENLHRTTENSSDIHYADIWAQRDGPDVVSQESLEACNESRASEQPKLEKEESNVNMDDNDHQMEFQARNSSSSNPSPSFVDDHENEIRQELRWLKAKYQIQLRELRDQQLGVKTKSLSLHPISSLTETDNGAPVSLLLPNFNEAANNKIVQTSLSFGKNITSHSPYDAADNILENQTFQDDNVIVDESSSTELIVTAKSFYTGALFPHSLQRATSLPVDAIDF 740
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 20725952 20729747 + MELO3C012645.2.1 Cme01g01561 318537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g01561 740 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK1-RELATED 5 729 - -
Cme01g01561 740 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 380 434 IPR024678 GO:0004674|GO:0005524
Cme01g01561 740 SUPERFAMILY Protein kinase-like (PK-like) 30 285 IPR011009 -
Cme01g01561 740 CDD STKc_WNK 25 284 - -
Cme01g01561 740 ProSiteProfiles Protein kinase domain profile. 27 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme01g01561 740 Gene3D Phosphorylase Kinase; domain 1 11 108 - -
Cme01g01561 740 Pfam Protein kinase domain 30 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme01g01561 740 Coils Coil 605 625 - -
Cme01g01561 740 Gene3D - 363 445 - -
Cme01g01561 740 MobiDBLite consensus disorder prediction 546 570 - -
Cme01g01561 740 SMART serkin_6 27 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme01g01561 740 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 5 729 - -
Cme01g01561 740 ProSitePatterns Serine/Threonine protein kinases active-site signature. 151 163 IPR008271 GO:0004672|GO:0006468
Cme01g01561 740 Gene3D Transferase(Phosphotransferase) domain 1 110 289 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01561 Cme-Chr1:20725952 Cme05g01762 Cme-Chr5:26633620 0 dispersed
Cme01g01561 Cme-Chr1:20725952 Cme11g01446 Cme-Chr11:21379247 1.53E-165 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64617 PF00069 Pkinase 2.70E-49 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g01561 K08867 - csv:101210511 1434.08