Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g01562 ATGGAGGACGGTGTGAGATCTGCCGGTGGTTCGTCGGGGGTCTTGGTGAAGACTAGGAACTCTTCTGGTTGCTTAATTGTTAGAAAAAAAGAGGATGGGTTAGGAGGTGCTGGTTCTTCGGGCTCACGCTTGCTTAATGCAAAGAAGGAGAAGAAGAGACCTAGGTTGGTTTTGAGTGATTCTGGGTCCAGCGACGAGGTGTTGTTGCCTTATCGTAGACGGGTTGGTCCTGAAACCATTCGGGTTTGTAATGGTTTGAATTCTTTTGGGAAGGATGTTTTGGACGGGAGTGGAAGTATCAGAAAGAAGGATAGGTTGCAGTATGTTAAGCGGAATGATGATGGTTTAATCAACAGGATGGATGTAGATGGTTTACGAAGAAATATGGACACCTTAGATGTCTTTGAGTTCGATGAGTATGATGAAATTGATGGTGATGCTAGGCGGATGAAGCATTTTAATGACAGTGGAGAAAGACGGTTTGTTGGTGCCATGAAATTGCCTCAAAGTGGGATCGAGAGGGAATTTGGAACCACTTCTAGCAGGCATGGTTTGGCGGACAAGAGGAAGAATTTTTATGCTGAACAAACCAATAGCTTTGATCGGGACAGACCTTCAAGAAAGATTAATTATGACTCAGATGATGACGGACCTCACCTCCCAACACCTTTGTTGAGAGATAAGTTTAGGGGTCATTCCGATGAAGCAATCAGGGTTCAGGGGAAAAATGGAGTTTTGAAGGTCATGGTGAATAAGAAGAAAAATGTGAGTGGAGCTTCCGATATTTTTGAGCATCGCAAAATAGAAGAAAGTAGAAAGGGTCTAAGGACTGAAGATACCCAGAAAAGGAAAGTGTTAGTTTCTCCTTCACTTCACCCAGAAACTAAGCCCAATGTGAAACAGGATCTCTTTTCTAAGCCAGAGAAAGACCATACAGATTTTCAAACTTCGGCATCAACAAAAAATGTAAAAGGTAGCAGTTGGGATTCAGGTGATGGCAGTGTGTCATTGAAGGCGAGAAAAAAGGTTGTTGAAGCTCAGAAATCTACCAAGAAGGCAAGTTGTGAAGTTGAAAAAGTTCCATGTGAAGATACTCCCCCAAGTACAGCAAAGGAAGGAAAAGTAAAACGAGGCAGTGGAACAGAGAAACAAAAGCTACGTGAAAGGATCAGGGGAATGCTCCTTAGTGCTGGCTGGAAAATCGATTACAGACCTAGAAGAAATAGAGATTATTTAGATGCTGTCTATGTTAATCCCACTGGAACAGCTTATTGGTCAATTATTAAAGCTTATGATGCCCTTCAAAAGCAATTGAATGAAGATGGAGCAGAGGCTAAACCTATTGCTGATGGTTCGTTTACACCAATATCAGATGATATTCTTAGTCAATTAACCAGGAAAACTAGAAAGAAAATTGAGAAAGAATGGAAAAATAAGCGGAGAGATGATAGTGACAGTGAAAATGCTAAAGATGCAAGTGCTCTAAGATCTGCTGGTACAAAAAATGACATGGACAGCATGGACAGTGACAGCAACGAAGAAAAGTTAAGCTCTTTCATAAAGCAGGGTGGAAAATCTTTTAAAAATAAATTGAACGATAATGGGTTACCCAATGTAAACTCCAAAGGTCAAAGTTCTAGTAAGTATTCTCGTGATGCCGTTGTGAAATCTTCTTCTGGATCCAATTCACGTGTTTTACATGGAAGAAAAGGTAGAAAGCTTGGATTGTTAGTTCGTGGATCTAGTAGAGGATTAGATTCAGAGAATGATGGATATGTTCCATATACTGGTAAAAGGACTCTGCTTTCCTGGCTTATTGATTCCGGAACTGTGCAGTTGAGCCAAAAGGTCCGCTACATGAACCGCAGACAGACCCGGGTAATGCTGGAGGGGTGGATTACGAGAGATGGCATTCATTGTGGTTGCTGTAGCAAAATCCTCACTGTCTCAAAGTTTGAGATACATGCTGGAAGCAAACTACGCCAACCTTTTCAAAACATCTTTTTGGAGTCTGGGCTTTCTCTTCTGCAGTGCCAGAGAGATGCATGGAATAGACAGGAGGATTCTAAACTCCTCAGTTTCCACACGGTTGAAATTGACGGTGATGATCCAAATGATGATACATGTGGCATCTGTGGAGATGGTGGAGACTTGATCTGTTGTGATGGGTGTCCATCAACGTTTCATCAGAGTTGTTTAGATATTCTGATTCCTCCTGGTGATTGGCACTGCCCAAATTGTACTTGCAAGTATTGTGGAGTTGCCGGTACTGATATTTCCGAGGGAGACAGTACCAGTATTCCTGAGATATCTACTTGCATATTATGCGAGAAAAAATTTCATGAATCTTGCAATCCGGAGATGGATACTCCTGTTCATTCCAGTGGTCTAGTCACTTCTTTTTGTGGCAAGAGTTGCAGAGAGCTTTTTGAGAGTTTGCAGAAGAATCTTGGGGTGAAACATGAGTTAGATGCAGGATTCTCTTGGTCTCTTATCCGTAGAGCAAGTGAAGATTCAGATGTATCTGTTCGTGGACTTTCTCAAAGGATTGAATCCAACTCTAAACTGGCTGTTGCATTAACAGTTATGGACGAATGCTTTTTGCCTATTGTTGACAGGAGGAGTGGGATAAATCTAATTCATAATGTTCTTTATAACTGTGGATCAAACTTTTCTAGGCTGAATTATAGTGGCTTCTACACTGCTATTTTGGAAAGGGGTGATGAAATCATCTCTGCAGCAACAATCAGGTTTCATGGGACTAAGTTAGCTGAAATGCCATTCATTGGTACCCGCCATATTTATAGGCGTCAAGGAATGTGTCGTCGGCTTTTTTGTGCAATTGAATCTGCTCTCCGCGTGTTTAAGGTTGAGAAACTGATTATACCAGCAATTGCTGAGCTCATGCACACTTGGAATGTGATTTTTGGCTTTAGTCCTTTGGAGCAATCACTCAAGCAAGAAATGAGATTGATGAATATGTTGGTGTTCCCTGGAACAGATATGTTACAGAAGCTGTTAATCCAAGAGACAATTGTCGAGGAGAATACTTCTAATGGCTCAGGTGCAAAGCAAACGGATTGTAGAAGTACAGAGTTTAGTAGTCCTAAGATGGAAACAGAGACTTCATCCGGTCATGAACCTCAAAGTTGTGATGACATGGAACAGCATCACTCTAAGGAGAAAACAAATGAAGCAGCTGTCCCTAACCTGAAGCCTGAATCCGTGTCTGTTTCTCTAAATGATACTTCTGCGGCAAATAGTCCTTTGGATACATTTTGTGAAGTTAAAGCATCAGGTTCACCAATGCAAACCGTAAATTCAGAATCTGATTCTGGTGATCAAGTTAAATGTTCGTCTCCATCTGATTCAACCAACTCTCTTCAACGGAAAAATCAGCCTGAAATTCAGCATGGTATAGAGGACAATGTGCAGTCTACATCCCAATGTATCGAAGTGGATACATCTTCGGACAATTTTCATGAACCTAAGGTTAAAGTTTCAGATGAAGGAATCATTTGTTCCAACTTTCAAGAACCTAAGGTTAAAGTTTCAGATGAAGGAATCTTTTGTTCCAACTCTCATGCTGGGCACGAATTGGCCGACTCCTTTTCTGAGAAGAAATCGATTTCTCCTGCAATTGGCAATGGCATAGATGAGTTTGGAAATGATATACCGGCTGTGGATTGTCCTGAAGATGATAAGCCATTCAATAAGATTAATGGTCATGAATTCCATGAAGACGATGCCCTTGTTAATGCTCTTAAACCTGCTCATTCGGTTGAGAATTTTGCCAATGACATCATCAGTGAAAATCCACTTGTCTCTTCTACTAGTCTGTGCGACACTAATGGACGCCCCTTTGAGACTGCATCTGATTGCAAAAATCCAGGACCCTATGGGAAAGAAACTATTTCTGATGGAATTTATGACGGTGAAAATTCTCCACGGTCATGTGGGGCAAAAGCCAAAGGTGATTCACATGAAGAGAGAGCTGAATCTGGTTCGGTTTGA 4014 41.41 MEDGVRSAGGSSGVLVKTRNSSGCLIVRKKEDGLGGAGSSGSRLLNAKKEKKRPRLVLSDSGSSDEVLLPYRRRVGPETIRVCNGLNSFGKDVLDGSGSIRKKDRLQYVKRNDDGLINRMDVDGLRRNMDTLDVFEFDEYDEIDGDARRMKHFNDSGERRFVGAMKLPQSGIEREFGTTSSRHGLADKRKNFYAEQTNSFDRDRPSRKINYDSDDDGPHLPTPLLRDKFRGHSDEAIRVQGKNGVLKVMVNKKKNVSGASDIFEHRKIEESRKGLRTEDTQKRKVLVSPSLHPETKPNVKQDLFSKPEKDHTDFQTSASTKNVKGSSWDSGDGSVSLKARKKVVEAQKSTKKASCEVEKVPCEDTPPSTAKEGKVKRGSGTEKQKLRERIRGMLLSAGWKIDYRPRRNRDYLDAVYVNPTGTAYWSIIKAYDALQKQLNEDGAEAKPIADGSFTPISDDILSQLTRKTRKKIEKEWKNKRRDDSDSENAKDASALRSAGTKNDMDSMDSDSNEEKLSSFIKQGGKSFKNKLNDNGLPNVNSKGQSSSKYSRDAVVKSSSGSNSRVLHGRKGRKLGLLVRGSSRGLDSENDGYVPYTGKRTLLSWLIDSGTVQLSQKVRYMNRRQTRVMLEGWITRDGIHCGCCSKILTVSKFEIHAGSKLRQPFQNIFLESGLSLLQCQRDAWNRQEDSKLLSFHTVEIDGDDPNDDTCGICGDGGDLICCDGCPSTFHQSCLDILIPPGDWHCPNCTCKYCGVAGTDISEGDSTSIPEISTCILCEKKFHESCNPEMDTPVHSSGLVTSFCGKSCRELFESLQKNLGVKHELDAGFSWSLIRRASEDSDVSVRGLSQRIESNSKLAVALTVMDECFLPIVDRRSGINLIHNVLYNCGSNFSRLNYSGFYTAILERGDEIISAATIRFHGTKLAEMPFIGTRHIYRRQGMCRRLFCAIESALRVFKVEKLIIPAIAELMHTWNVIFGFSPLEQSLKQEMRLMNMLVFPGTDMLQKLLIQETIVEENTSNGSGAKQTDCRSTEFSSPKMETETSSGHEPQSCDDMEQHHSKEKTNEAAVPNLKPESVSVSLNDTSAANSPLDTFCEVKASGSPMQTVNSESDSGDQVKCSSPSDSTNSLQRKNQPEIQHGIEDNVQSTSQCIEVDTSSDNFHEPKVKVSDEGIICSNFQEPKVKVSDEGIFCSNSHAGHELADSFSEKKSISPAIGNGIDEFGNDIPAVDCPEDDKPFNKINGHEFHEDDALVNALKPAHSVENFANDIISENPLVSSTSLCDTNGRPFETASDCKNPGPYGKETISDGIYDGENSPRSCGAKAKGDSHEERAESGSV 1337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 20733835 20742990 + MELO3C012646.2.1 Cme01g01562 318538

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g01562 1337 MobiDBLite consensus disorder prediction 516 565 - -
Cme01g01562 1337 MobiDBLite consensus disorder prediction 1100 1132 - -
Cme01g01562 1337 MobiDBLite consensus disorder prediction 474 566 - -
Cme01g01562 1337 SMART PHD_3 751 807 IPR001965 -
Cme01g01562 1337 SMART PHD_3 708 748 IPR001965 -
Cme01g01562 1337 MobiDBLite consensus disorder prediction 360 383 - -
Cme01g01562 1337 MobiDBLite consensus disorder prediction 1322 1337 - -
Cme01g01562 1337 Pfam Tify domain binding domain 631 681 IPR032308 -
Cme01g01562 1337 SUPERFAMILY FYVE/PHD zinc finger 696 753 IPR011011 -
Cme01g01562 1337 ProSiteProfiles Zinc finger PHD-type profile. 706 750 IPR019787 -
Cme01g01562 1337 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER PROTEIN 1 1189 - -
Cme01g01562 1337 MobiDBLite consensus disorder prediction 1016 1072 - -
Cme01g01562 1337 MobiDBLite consensus disorder prediction 273 334 - -
Cme01g01562 1337 MobiDBLite consensus disorder prediction 491 505 - -
Cme01g01562 1337 ProSitePatterns Zinc finger PHD-type signature. 709 747 IPR019786 -
Cme01g01562 1337 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 696 806 IPR013083 -
Cme01g01562 1337 MobiDBLite consensus disorder prediction 474 490 - -
Cme01g01562 1337 PANTHER PHD FINGER FAMILY PROTEIN 1 1189 - -
Cme01g01562 1337 MobiDBLite consensus disorder prediction 34 57 - -
Cme01g01562 1337 MobiDBLite consensus disorder prediction 316 333 - -
Cme01g01562 1337 MobiDBLite consensus disorder prediction 1046 1067 - -
Cme01g01562 1337 MobiDBLite consensus disorder prediction 196 220 - -
Cme01g01562 1337 MobiDBLite consensus disorder prediction 369 383 - -
Cme01g01562 1337 MobiDBLite consensus disorder prediction 1016 1045 - -
Cme01g01562 1337 MobiDBLite consensus disorder prediction 299 315 - -
Cme01g01562 1337 CDD PHD2_CHD_II 709 747 - -
Cme01g01562 1337 MobiDBLite consensus disorder prediction 1288 1337 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g01562 - - - cmo:103489665 2613.56
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01562 Cme-Chr1:20733835 Cme01g02078 Cme-Chr1:29606538 0 dispersed
Cme01g01562 Cme-Chr1:20733835 Cme04g02472 Cme-Chr4:31223673 9.15E-40 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g496 . . . Bda08g00235 Bpe04g00832 . Bma04g00785 . Cmo08g01120 Cmo17g00223 . . . . . . . . . . . . . . Cla06g00583 Cam06g0621 Cec06g0623 Cco06g0629 Clacu06g0608 Cmu06g0601 Cre06g1369 Cone14ag0851 . . . . . . . . . . . Bpe05g00903 . . . Sed09g1123 . . Cma08g01143 Cma17g00236 Car08g01026 Car17g00215 Cpe12g00199 Cpe17g00147 Bhi12g01710 Tan06g0978 Cmetu01g0849 Lac12g2278 Hepe03g0198 . Lcy13g0282 . . . . . . . Lsi09g01321 . . Cme01g01562
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006686 1 1 2 1 2 1 2 1 1 1 1 1 2 1 1 3 1 2 2 1 1 1 1 1 1 1 1 1 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme01g01562 Cme_Chr01 FPKM 0.429746 0.0 0.221943 0.391212 8.432973 6.550599 6.609475 0.776339 0.8583 0.652173