Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g01564 ATTTTGTCAATACTTTTAAAAAATACTATATTTTCAAAATTAACCCCAATTTTCCAAAGTTTTATTATTAAAGAAAAAAATCCAAGCCCAAATTTCGACCTGGGACCGCCGTGGTTGGTCGAACCCTTTCCAATGGAGCTTTCGGCATCTCCCCGCCTACTAAGCTCTCCCACTTCGCTGATGCCACTCAAACCCAAATTTGGGTTTAGGGTTTCTCAGATTTCTTCATCGACCTTCCATCTTCACTCTTCTGTTTTATCTCTTAAACCCAATTACAAAATGGAATTTACTAGGACAGTATGTTCTGCTTCTTCGTCTGAACGAAACGGGTCACCGGCGGCTATTTCTTCAACCGCTTCAGGGCCTCGAGTGGGCGAAGTGAAAAGGGTCACCAAGGAAACAAATGTATCTGTCAAGATAGACCTCGATGGTTCTGGGATTGCGGATAGTAGTACTGGGATTCCATTTCTTGATCATATGTTAGATCAACTTTCTTCACATGGGCTCTTCGATGTGCACGTAAGGGCCACAGGAGACATCCACATTGATGATCACCACACTAATGAAGATGTTGCCCTCGCTATTGGATCGATTGTTGTTCTACTGTATGACTGGAGATGTTCTCTGTTGATGAAAATGTTTGCCATGGCTTATGAACTGGCTTTGTTGAATGCACTTGGTGATCGGAAAGGAATTTACCGGTTTGGAGACTTCTCTGCTCCTCTTGATGAAGCACTTGTACACGTATCACTAGATTTATCTGGCAGGCCACATTTGAGTTATGATTTAGAGATACCTACTCAGAGAGTCGGAACATATGATACCCAGTTGGTGGAGCATTTCTTCCAGTCTTTGGTGAATACTTCTGGTATGACTCTTCACATTCGACAGCTTGCTGGAAAGAATTCTCATCATATTATTGAAGCCACGTTCAAAGCCTTTGCCAGGGCCCTTAGACAAGCAACAGAGTATGACCCACGTCGTCTTGGTTCCGTGCCCAGGGATTTTGATTGGAGCAATGTTTCATATGAAAGTGATCACCGCTGCTTCGGTCCAGTACGTAGATGGATGCTTGAGCAGGAAGAGTGGCAGATGGATTCTTGTATGGTTGATAATAGAACATGTATATGA 1131 43.06 ILSILLKNTIFSKLTPIFQSFIIKEKNPSPNFDLGPPWLVEPFPMELSASPRLLSSPTSLMPLKPKFGFRVSQISSSTFHLHSSVLSLKPNYKMEFTRTVCSASSSERNGSPAAISSTASGPRVGEVKRVTKETNVSVKIDLDGSGIADSSTGIPFLDHMLDQLSSHGLFDVHVRATGDIHIDDHHTNEDVALAIGSIVVLLYDWRCSLLMKMFAMAYELALLNALGDRKGIYRFGDFSAPLDEALVHVSLDLSGRPHLSYDLEIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATEYDPRRLGSVPRDFDWSNVSYESDHRCFGPVRRWMLEQEEWQMDSCMVDNRTCI 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 20762669 20766920 + MELO3C012647.2.1 Cme01g01564 318540

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g01564 376 Gene3D Imidazole glycerol phosphate dehydratase; domain 1 110 233 IPR038494 -
Cme01g01564 376 SUPERFAMILY Ribosomal protein S5 domain 2-like 123 198 IPR020568 -
Cme01g01564 376 SUPERFAMILY Ribosomal protein S5 domain 2-like 231 323 IPR020568 -
Cme01g01564 376 PANTHER IMIDAZOLEGLYCEROL-PHOSPHATE DEHYDRATASE 45 199 - -
Cme01g01564 376 PANTHER IMIDAZOLEGLYCEROL-PHOSPHATE DEHYDRATASE 214 334 - -
Cme01g01564 376 PANTHER IMIDAZOLEGLYCEROL-PHOSPHATE DEHYDRATASE HIS7 214 334 IPR000807 GO:0000105|GO:0004424
Cme01g01564 376 PANTHER IMIDAZOLEGLYCEROL-PHOSPHATE DEHYDRATASE HIS7 45 199 IPR000807 GO:0000105|GO:0004424
Cme01g01564 376 ProSitePatterns Imidazoleglycerol-phosphate dehydratase signature 2. 300 312 IPR020565 GO:0000105|GO:0004424
Cme01g01564 376 Hamap Imidazoleglycerol-phosphate dehydratase [hisB]. 123 358 IPR000807 GO:0000105|GO:0004424
Cme01g01564 376 Pfam Imidazoleglycerol-phosphate dehydratase 215 318 IPR000807 GO:0000105|GO:0004424
Cme01g01564 376 Pfam Imidazoleglycerol-phosphate dehydratase 152 198 IPR000807 GO:0000105|GO:0004424
Cme01g01564 376 CDD IGPD 125 327 IPR000807 GO:0000105|GO:0004424
Cme01g01564 376 ProSitePatterns Imidazoleglycerol-phosphate dehydratase signature 1. 182 195 IPR020565 GO:0000105|GO:0004424
Cme01g01564 376 Gene3D Imidazole glycerol phosphate dehydratase; domain 1 234 335 IPR038494 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g01564 K01693 hisB; imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19] - csv:101211659 493.041
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g497 Blo01g00125 Blo12g00330 Bda03g00887 Bda08g00236 Bpe04g00831 . Bma04g00784 Bma05g01109 . Cmo17g00222 . . . . . . . . . . . . . . Cla06g00584 Cam06g0622 Cec06g0624 Cco06g0630 Clacu06g0609 Cmu06g0602 Cre06g1370 . . . . . . . . . . . . Bpe05g00902 . . . Sed01g0119 . . . Cma17g00235 . Car17g00214 Cpe12g00198 . Bhi12g01709 Tan06g2522 Cmetu01g0197 . Hepe03g0199 . Lcy13g0283 . . . . . . . Lsi09g01320 . . Cme01g01564
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007721 2 1 0 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 4 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme01g01564 Cme_Chr01 FPKM 3.17619 5.210124 4.257614 6.468144 7.591749 12.089416 5.358189 8.267695 6.986537 6.217028