Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g01570 ATGGCATTTCCGGTGGCGAGAGCAGCGTCTCTTGCTCACATAGCTAGAGAATCTTCCAATATTCATCGCCTTTCTCAATTCTACAAAGAGATGTTTGGATTTGAAGAAATCGAGAGTCCAGATTTCGGTGCACTCAAGGTTATTTGGTTAAATCTTCCTTCTGCCTTTCAACTTCACCTCATCGAAAGAGACCCTAATTCCAAGCTTCCCGAAGGACCGTGCAGCGCCACGTCACCCGTTGCTGACCCTAGCCATCTTCCTCGAGGTCACCACATCTGTTTCTCTGTTCCCATTTCCAATTTCGACTCTCTCGTTCATGCTCTCAAGAAAGTTTGCTCTTCCTTTTACATGCATTACAGTCCTAATGTATTAGATATGGGTGGACTAAACTATGTTTTGCTGCAGGAAAAGGGCATCCAGACTTTTGAGAAGACCCTTCCAAATGGGAAGGTAAAGCAAGTCTTCTTCTTTGATCCGGATGGTAATGGATTGGAGATTGCAAGTCGGGAAGATTGA 516 44.77 MAFPVARAASLAHIARESSNIHRLSQFYKEMFGFEEIESPDFGALKVIWLNLPSAFQLHLIERDPNSKLPEGPCSATSPVADPSHLPRGHHICFSVPISNFDSLVHALKKVCSSFYMHYSPNVLDMGGLNYVLLQEKGIQTFEKTLPNGKVKQVFFFDPDGNGLEIASRED 171
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 20827630 20829216 - MELO3C012654.2.1 Cme01g01570 318546

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g01570 171 Gene3D - 9 170 IPR029068 -
Cme01g01570 171 PANTHER GLYOXALASE FAMILY PROTEIN, EXPRESSED 133 170 - -
Cme01g01570 171 PANTHER GLYOXALASE FAMILY PROTEIN, EXPRESSED 6 112 - -
Cme01g01570 171 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 10 169 IPR029068 -
Cme01g01570 171 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 10 169 IPR037523 -
Cme01g01570 171 CDD VOC_like 11 166 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g01570 - - - csv:101211159 275.018
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g509 . Blo12g00333 Bda03g00880 . Bpe04g00825 . Bma04g00778 . . Cmo17g00217 . . . . . . . . . . . . . . Cla06g00590 Cam06g0629 Cec06g0632 Cco06g0635 Clacu06g0615 Cmu06g0608 Cre06g1376 . . . . . . . . . . . . . . . . Sed04g1910 . . . Cma17g00228 . Car17g00207 Cpe12g00193 . Bhi12g01702 Tan06g2516 Cmetu01g0171 Lac12g2273 Hepe03g0205 . Lcy13g0288 . . . . . . . Lsi09g01313 . . Cme01g01570
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012331 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme01g01570 Cme_Chr01 FPKM 4.526316 2.755291 6.897865 6.967473 5.025643 5.094401 8.103655 4.483044 4.842429 5.72621