Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g01576 ATGGAAGATAGAAAGATGGAAGTAAGTATTGTTTTGGGAATGGTGGGGTTGTTGTTATGGGCAGGGGAAGCAGTGGGTCAATCCTCGGATTGTAACAATGTGTTGATTAGCCTCTCACCTTGCCTTAATTATATCAACGGCAACTCCTCCACCCCGTCTCCAAGTTGCTGCTCGCAACTGACCACCGTCGTCCGCTCCCAACCCCAATGTCTTTGCCAAGTCTTCGATAACGGTGGCGGTGCCTCCGCGCTTGGAGGGCTAAATGTCAATCAAACTCTGGCTCTTGCGCTCCCTGCTGCTTGTCGTCTACAAACTCCGCCCATTTCCCGCTGTAACGCAACTTCTCCCACGGATGATAGTCCTGCAGAAACACCAAAATCCTCAAACGAAGAGCCTACAGAAGGAGGATCAAGAAGAAATGTGCCAACAACTAGAGAAGATGGAACATCAAATGGATCGACTTCAACAATATTGTTGTCCAAAGCTATGCTCTTCATTTTCATTCTTGCTTCAACTTTTGCTTCACTAATCCATTGA 537 47.3 MEDRKMEVSIVLGMVGLLLWAGEAVGQSSDCNNVLISLSPCLNYINGNSSTPSPSCCSQLTTVVRSQPQCLCQVFDNGGGASALGGLNVNQTLALALPAACRLQTPPISRCNATSPTDDSPAETPKSSNEEPTEGGSRRNVPTTREDGTSNGSTSTILLSKAMLFIFILASTFASLIH 178
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 20910269 20914115 - MELO3C012661.2.1 Cme01g01576 318552

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g01576 178 Gene3D - 28 109 IPR036312 -
Cme01g01576 178 MobiDBLite consensus disorder prediction 110 152 - -
Cme01g01576 178 PANTHER LIPID TRANSFER PROTEIN 7 171 - -
Cme01g01576 178 CDD AAI_LTSS 38 103 - -
Cme01g01576 178 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN-RELATED 7 171 IPR043325 -
Cme01g01576 178 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 30 113 IPR036312 -
Cme01g01576 178 SMART aai_6 31 111 IPR016140 -
Cme01g01576 178 Pfam Probable lipid transfer 27 111 IPR016140 -
Cme01g01576 178 PRINTS Plant phospholipid transfer protein signature 30 46 IPR000528 GO:0006869|GO:0008289
Cme01g01576 178 PRINTS Plant phospholipid transfer protein signature 51 65 IPR000528 GO:0006869|GO:0008289
Cme01g01576 178 PRINTS Plant phospholipid transfer protein signature 88 105 IPR000528 GO:0006869|GO:0008289
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g01576 - - - cmo:103489675 352.829
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme01g01576 Cme06g00596 CCT
Cme01g01576 Cme06g00596 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01576 Cme-Chr1:20910269 Cme06g00596 Cme-Chr6:3835139 2.44E-54 dispersed
Cme01g01576 Cme-Chr1:20910269 Cme02g00441 Cme-Chr2:3743775 1.85E-14 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g527 . . . . . . . . . . Cma06g01397 . Car06g01204 . Sed02g1301 . . Bhi01g00791 Tan10g0822 Cmetu01g2184 . Hepe05g1566 . Lcy11g1562 . . . . . . . . . . . . . . Cme06g00596 . Blo07g00223 Bda11g00584 Bda13g00111 . Bpe13g00600 Bma02g00835 . . . . . . . . . . . . . . . . . . . . . . . . Lsi09g01309 Csa03g01312 Chy06g00564 Cme01g01576
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001192 1 2 1 1 1 3 3 3 3 3 3 3 3 3 3 3 3 4 3 3 2 2 1 2 3 3 3 2 3 4 77
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme01g01576 Cme_Chr01 FPKM 4.185211 5.193345 3.733595 3.977958 4.632135 4.426116 4.856058 4.727582 3.630667 3.687101