Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g01581 ATGGCTTCCCATTCCCCTAACCTCGAGTGTCGGATGTACGAGGCAAAGTACCCAGAGGTGGATATGGCTGTCATGATTCAGGTCAAGAACATCGCCGATATGGGCGCCTACGTCTCCCTTCTTGAATACAACAATATCGAGGGTATGATTCTTTTCTCCGAGCTCTCTCGCCGTCGAATTCGTAGTGTCAGCAGCTTAATTAAGGTCGGCCGTATCGAGCCCGTCATGGTCCTTAGGGTTGACAAGGAGAAGGGATATATTGATTTGAGTAAGAGAAGGGTGTCTGAGGAGGATATTCAGGCCTGTGAGGAGAGGTATAACAAGAGCAAGCTCGTTCACTCTATAATGCGCCATGTTGCTGAAACTATGAACATTGATTTAGAGGACTTATATATCCATGTTGGATGGCCTTTGTACCGGAAATATGGTCATGCTTTTGAGGCATTCAAGATCATTGTAACTGACCCTGACTCAGTGTTGAATTCTCTAACCCGTGAAGTCAAGGAAGCTGGTCCTGATGGACAGGAGGAAACTAAGATAGTTCCTGCAATGTCCGAGGATGTAAAAGATGCACTAATAAAGAATATTAGAAGAAGAATGACTCCCCAACCCTTGAAGGTCCGAGCTGATATTGAGATGAAGTGTTTCCAATTTGATGGTGTTCTTCACATAAAGGAAGCAATGCGTAAAGCTGAAGCTGCTGGAAATGATGATTGTCCTGTTAAAATTAAATTGGTTGCTCCTCCACTCTACGTCCTTACTACTCAGACACTTGACAAGGAGCAAGGAATCACTGTTCTTGAAAAAGCAATTGCTGCTTGCACTGAGGCAATTGAGCATCACAAGGGAAAGCTTGTGGTGAAGGAGACACCCAGAGCGGTAAGTGAAAGAGATGACAAATTGCTTGCTGAGCACATGGCGAAGCTACGACAAGACAATGAAGAAATCAGTGGAGATGAGGATAGTGAGGAGGAGGAAGACACAGGAATGGGGGAAGTCGATGTTGAGAATGCAGGTCCTGGGATCACTGAGTAA 1035 45.22 MASHSPNLECRMYEAKYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETMNIDLEDLYIHVGWPLYRKYGHAFEAFKIIVTDPDSVLNSLTREVKEAGPDGQEETKIVPAMSEDVKDALIKNIRRRMTPQPLKVRADIEMKCFQFDGVLHIKEAMRKAEAAGNDDCPVKIKLVAPPLYVLTTQTLDKEQGITVLEKAIAACTEAIEHHKGKLVVKETPRAVSERDDKLLAEHMAKLRQDNEEISGDEDSEEEEDTGMGEVDVENAGPGITE 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 20956103 20962956 - MELO3C012667.2.1 Cme01g01581 318557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g01581 344 SUPERFAMILY Nucleic acid-binding proteins 10 92 IPR012340 -
Cme01g01581 344 PANTHER BNAC04G04870D PROTEIN 5 343 - -
Cme01g01581 344 MobiDBLite consensus disorder prediction 309 344 - -
Cme01g01581 344 ProSiteProfiles S1 domain profile. 21 92 IPR003029 GO:0003676
Cme01g01581 344 Pfam Eukaryotic translation initiation factor 2 alpha subunit 130 260 IPR011488 GO:0003723|GO:0003743
Cme01g01581 344 Coils Coil 306 326 - -
Cme01g01581 344 Gene3D - 6 94 IPR012340 -
Cme01g01581 344 Pfam S1 RNA binding domain 18 92 IPR003029 GO:0003676
Cme01g01581 344 CDD S1_IF2_alpha 18 93 IPR044126 GO:0003723
Cme01g01581 344 SMART S1_6 19 92 IPR022967 -
Cme01g01581 344 Gene3D Translation initiation factor 2; subunit 1; domain 2 95 172 IPR024054 -
Cme01g01581 344 Gene3D EIF_2_alpha 205 327 IPR024055 -
Cme01g01581 344 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 5 343 IPR011488 GO:0003723|GO:0003743
Cme01g01581 344 SUPERFAMILY eIF2alpha middle domain-like 94 199 IPR024054 -
Cme01g01581 344 MobiDBLite consensus disorder prediction 316 332 - -
Cme01g01581 344 SUPERFAMILY eIF-2-alpha, C-terminal domain 203 319 IPR024055 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01581 Cme-Chr1:20956103 Cme08g01611 Cme-Chr8:16642953 1.85E-07 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g01581 K03237 - csv:101209681 648.662