Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme01g01658 | ATGGCAGCCTCTTCTTCTTCTTCCTCTTCTCCATGTGGAGCTTGCAAATTTCTTAGAAGAAAGTGTGTCAATGGTTGCATCTTTGCTCCTTATTTCCGCCACGAGCTTGGAGCCTCTCACTTCTCTGCCATCCACAAAGTTTTTGGTGCGAGCAATGCTTCCAAGCTTCTCGCTCACCTCCCAGTCTCCCACCGTTGCGAAGCGGCTGTGACGATCTCATATGAAGCTCAAGCGAGACTTCAAGATCCGATCTACGGTTGCGTTTCTCATATTATCGCTCTCCAACAACAGGTCATGAATCTAAGGGCTCAAGTGGCTTGTTTAAGAGAACAAGCAGCACAAATTCTTCTCAACAATTATACCACAAGAAACTCTACTGAATTACCTTATGAAAAATCTCCATTTTATTATTCCGATGACCCATTTTTAGATCTTCAAAGCTGGCTTCTGACGGAGAGCTGCACTGCCGCCGCACCGGAGTTTGAACCCGCGGCGGTTCCGTACTTCGAGATGAGTGTCATCGATTCAAAACTCGCCGGAGATTTCTGTTGCTAA | 555 | 46.49 | MAASSSSSSSPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHLPVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVACLREQAAQILLNNYTTRNSTELPYEKSPFYYSDDPFLDLQSWLLTESCTAAAPEFEPAAVPYFEMSVIDSKLAGDFCC | 184 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 22716328 | 22717353 | + | MELO3C012741.2.1 | Cme01g01658 | 318634 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme01g01658 | 184 | Pfam | Lateral organ boundaries (LOB) domain | 11 | 108 | IPR004883 | - | |
Cme01g01658 | 184 | ProSiteProfiles | LOB domain profile. | 10 | 112 | IPR004883 | - | |
Cme01g01658 | 184 | Coils | Coil | 91 | 118 | - | - | |
Cme01g01658 | 184 | PANTHER | LOB DOMAIN CONTAINING PROTEIN | 7 | 133 | - | - | |
Cme01g01658 | 184 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 17-RELATED | 7 | 133 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme01g01658 | Cme-Chr1:22716328 | Cme04g01036 | Cme-Chr4:14194325 | 3.80E-62 | dispersed | |
Cme01g01658 | Cme-Chr1:22716328 | Cme06g00253 | Cme-Chr6:1538026 | 1.23E-41 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
40770 | PF03195 | LOB | 4.50E-34 | No_clan | Cme | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme01g01658 | K13945 | - | csv:101220863 | 342.813 |