Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g01658 ATGGCAGCCTCTTCTTCTTCTTCCTCTTCTCCATGTGGAGCTTGCAAATTTCTTAGAAGAAAGTGTGTCAATGGTTGCATCTTTGCTCCTTATTTCCGCCACGAGCTTGGAGCCTCTCACTTCTCTGCCATCCACAAAGTTTTTGGTGCGAGCAATGCTTCCAAGCTTCTCGCTCACCTCCCAGTCTCCCACCGTTGCGAAGCGGCTGTGACGATCTCATATGAAGCTCAAGCGAGACTTCAAGATCCGATCTACGGTTGCGTTTCTCATATTATCGCTCTCCAACAACAGGTCATGAATCTAAGGGCTCAAGTGGCTTGTTTAAGAGAACAAGCAGCACAAATTCTTCTCAACAATTATACCACAAGAAACTCTACTGAATTACCTTATGAAAAATCTCCATTTTATTATTCCGATGACCCATTTTTAGATCTTCAAAGCTGGCTTCTGACGGAGAGCTGCACTGCCGCCGCACCGGAGTTTGAACCCGCGGCGGTTCCGTACTTCGAGATGAGTGTCATCGATTCAAAACTCGCCGGAGATTTCTGTTGCTAA 555 46.49 MAASSSSSSSPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHLPVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVACLREQAAQILLNNYTTRNSTELPYEKSPFYYSDDPFLDLQSWLLTESCTAAAPEFEPAAVPYFEMSVIDSKLAGDFCC 184
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 22716328 22717353 + MELO3C012741.2.1 Cme01g01658 318634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g01658 184 Pfam Lateral organ boundaries (LOB) domain 11 108 IPR004883 -
Cme01g01658 184 ProSiteProfiles LOB domain profile. 10 112 IPR004883 -
Cme01g01658 184 Coils Coil 91 118 - -
Cme01g01658 184 PANTHER LOB DOMAIN CONTAINING PROTEIN 7 133 - -
Cme01g01658 184 PANTHER LOB DOMAIN-CONTAINING PROTEIN 17-RELATED 7 133 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01658 Cme-Chr1:22716328 Cme04g01036 Cme-Chr4:14194325 3.80E-62 dispersed
Cme01g01658 Cme-Chr1:22716328 Cme06g00253 Cme-Chr6:1538026 1.23E-41 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40770 PF03195 LOB 4.50E-34 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g01658 K13945 - csv:101220863 342.813