Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g01658 ATGGCAGCCTCTTCTTCTTCTTCCTCTTCTCCATGTGGAGCTTGCAAATTTCTTAGAAGAAAGTGTGTCAATGGTTGCATCTTTGCTCCTTATTTCCGCCACGAGCTTGGAGCCTCTCACTTCTCTGCCATCCACAAAGTTTTTGGTGCGAGCAATGCTTCCAAGCTTCTCGCTCACCTCCCAGTCTCCCACCGTTGCGAAGCGGCTGTGACGATCTCATATGAAGCTCAAGCGAGACTTCAAGATCCGATCTACGGTTGCGTTTCTCATATTATCGCTCTCCAACAACAGGTCATGAATCTAAGGGCTCAAGTGGCTTGTTTAAGAGAACAAGCAGCACAAATTCTTCTCAACAATTATACCACAAGAAACTCTACTGAATTACCTTATGAAAAATCTCCATTTTATTATTCCGATGACCCATTTTTAGATCTTCAAAGCTGGCTTCTGACGGAGAGCTGCACTGCCGCCGCACCGGAGTTTGAACCCGCGGCGGTTCCGTACTTCGAGATGAGTGTCATCGATTCAAAACTCGCCGGAGATTTCTGTTGCTAA 555 46.49 MAASSSSSSSPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHLPVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVACLREQAAQILLNNYTTRNSTELPYEKSPFYYSDDPFLDLQSWLLTESCTAAAPEFEPAAVPYFEMSVIDSKLAGDFCC 184
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 22716328 22717353 + MELO3C012741.2.1 Cme01g01658 318634

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g01658 184 Pfam Lateral organ boundaries (LOB) domain 11 108 IPR004883 -
Cme01g01658 184 ProSiteProfiles LOB domain profile. 10 112 IPR004883 -
Cme01g01658 184 Coils Coil 91 118 - -
Cme01g01658 184 PANTHER LOB DOMAIN CONTAINING PROTEIN 7 133 - -
Cme01g01658 184 PANTHER LOB DOMAIN-CONTAINING PROTEIN 17-RELATED 7 133 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g01658 K13945 LBD29; LOB domain-containing protein 29 - csv:101220863 342.813
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01658 Cme-Chr1:22716328 Cme04g01036 Cme-Chr4:14194325 3.80E-62 dispersed
Cme01g01658 Cme-Chr1:22716328 Cme06g00253 Cme-Chr6:1538026 1.23E-41 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme05g01206 . 1 117 AS2 family AT1G65620 94.0 4.2e-60 228.0
Cme11g00229 . 2 110 AS2 family AT1G65620 81.7 6.3e-48 187.6
Cme02g02002 CCT,ECH 3 179 AS2 family AT1G65620 55.4 9.1e-47 183.7
Cme04g01850 CCT,ECH 3 113 AS2 family AT1G65620 70.3 2.1e-43 172.6
Cme09g00420 CCT,ECH 1 115 AS2 family AT1G65620 70.4 6.1e-43 171.0
Cme12g01670 CCT,ECH 12 116 AS2 family AT1G65620 73.3 6.3e-40 161.0
Cme11g00229 . 1 122 AS2 family AT5G66870 86.9 1.8e-57 219.9
Cme05g01206 . 4 112 AS2 family AT5G66870 77.1 8.7e-44 174.5
Cme02g02002 CCT,ECH 1 113 AS2 family AT5G66870 68.1 2.2e-39 159.8
Cme04g01850 CCT,ECH 7 113 AS2 family AT5G66870 68.2 2.9e-39 159.5
Cme09g00420 CCT,ECH 1 121 AS2 family AT5G66870 62.8 3.8e-39 159.1
Cme12g01670 CCT,ECH 12 139 AS2 family AT5G66870 61.7 1.9e-38 156.8
Cme11g00229 . 4 118 AS2 family AT2G23660 69.6 3.9e-44 175.6
Cme05g01206 . 6 112 AS2 family AT2G23660 69.2 7.6e-40 161.4
Cme02g02002 CCT,ECH 8 113 AS2 family AT2G23660 64.2 1.9e-38 156.8
Cme04g01850 CCT,ECH 7 123 AS2 family AT2G23660 58.1 2.1e-37 153.3
Cme12g01670 CCT,ECH 12 136 AS2 family AT2G23660 60.8 1.0e-36 151.0
Cme09g00420 CCT,ECH 4 114 AS2 family AT3G27650 87.4 2.8e-54 208.4
Cme04g01850 CCT,ECH 4 114 AS2 family AT3G27650 84.7 2.0e-52 202.2
Cme02g02002 CCT,ECH 4 114 AS2 family AT3G27650 78.4 1.9e-47 185.7
Cme12g01670 CCT,ECH 8 117 AS2 family AT3G27650 73.6 1.3e-43 172.9
Cme05g01206 . 3 112 AS2 family AT3G27650 68.2 7.1e-42 167.2
Cme11g00229 . 4 112 AS2 family AT3G27650 67.9 3.9e-40 161.4
Cme02g02002 CCT,ECH 3 113 AS2 family AT5G63090 93.7 4.1e-57 218.0
Cme04g01850 CCT,ECH 2 125 AS2 family AT5G63090 78.2 4.0e-52 201.4
Cme09g00420 CCT,ECH 1 113 AS2 family AT5G63090 85.1 2.2e-50 195.7
Cme12g01670 CCT,ECH 8 116 AS2 family AT5G63090 82.6 1.4e-49 193.0
Cme05g01206 . 3 112 AS2 family AT5G63090 74.5 2.1e-45 179.1
Cme11g00229 . 2 144 AS2 family AT5G63090 58.9 1.4e-41 166.4
Cme12g00980 . 14 125 AS2 family AT5G63090 64.3 4.2e-38 154.8
Cme10g01432 . 4 106 AS2 family AT5G63090 69.9 1.2e-37 153.3
Cme10g01432 . 3 114 AS2 family AT2G30130 92.0 2.6e-54 208.8
Cme11g01727 . 52 187 AS2 family AT2G30130 68.4 5.5e-49 191.0
Cme12g00980 . 10 129 AS2 family AT2G30130 68.3 6.3e-45 177.6
Cme01g01534 . 15 126 AS2 family AT2G30130 69.6 3.9e-42 168.3
Cme02g02002 CCT,ECH 8 129 AS2 family AT2G30130 61.5 1.2e-38 156.8
Cme10g01224 . 39 150 AS2 family AT2G30130 67.0 4.4e-38 154.8
Cme05g01206 . 7 109 AS2 family AT2G30130 67.0 8.3e-37 150.6
Cme04g01850 CCT,ECH 8 111 AS2 family AT2G30130 65.4 1.1e-36 150.2
Cme12g00980 . 4 170 AS2 family AT1G31320 74.0 2.2e-65 245.4
Cme01g01534 . 17 130 AS2 family AT1G31320 75.4 2.3e-46 182.2
Cme10g01432 . 2 122 AS2 family AT1G31320 68.3 2.8e-44 175.3
Cme11g01727 . 56 172 AS2 family AT1G31320 66.7 2.9e-41 165.2
Cme10g01224 . 48 160 AS2 family AT1G31320 63.7 6.7e-38 154.1
Cme02g02002 CCT,ECH 9 120 AS2 family AT1G31320 62.5 7.4e-37 150.6
Cme12g00335 . 67 239 AS2 family AT2G28500 54.3 1.5e-45 179.9
Cme12g00332 CCT,ECH 20 135 AS2 family AT2G28500 69.8 6.5e-44 174.5
Cme11g01769 CCT,ECH 96 261 AS2 family AT2G28500 53.2 4.2e-43 171.8
Cme10g00811 . 47 146 AS2 family AT2G28500 83.0 3.0e-41 165.6
Cme10g01432 . 5 113 AS2 family AT2G28500 66.1 7.6e-37 151.0
Cme11g01769 CCT,ECH 96 261 AS2 family AT1G07900 63.9 3.7e-45 178.3
Cme10g00811 . 48 209 AS2 family AT1G07900 66.5 1.7e-42 169.5
Cme12g00335 . 68 239 AS2 family AT1G07900 55.2 3.8e-42 168.3
Cme12g00332 CCT,ECH 21 135 AS2 family AT1G07900 67.0 1.6e-40 162.9
Cme12g00980 . 4 119 AS2 family AT1G16530 66.7 1.6e-41 166.0
Cme01g01534 . 19 125 AS2 family AT1G16530 68.5 5.8e-39 157.5
Cme10g01432 . 5 110 AS2 family AT1G16530 68.2 2.4e-37 152.1
Cme10g01224 . 1 157 AS2 family AT2G30340 68.9 5.9e-57 218.0
Cme03g01034 . 59 169 AS2 family AT2G30340 79.3 7.0e-50 194.5
Cme10g01224 . 32 157 AS2 family AT2G40470 86.5 2.3e-58 222.2
Cme03g01034 . 59 168 AS2 family AT2G40470 86.4 7.2e-52 200.7
Cme01g01534 . 1 132 AS2 family AT2G40470 58.3 2.7e-38 155.6
Cme12g00980 . 15 125 AS2 family AT2G40470 63.1 1.3e-37 153.3
Cme03g00267 . 1 121 AS2 family AT3G11090 77.7 4.4e-47 184.5
Cme01g01658 . 6 139 AS2 family AT2G42440 63.4 3.4e-43 172.2
Cme04g01036 . 1 95 AS2 family AT2G42440 84.2 5.7e-43 171.4
Cme04g01566 . 24 131 AS2 family AT2G42440 70.4 3.9e-39 158.7
Cme01g01658 . 1 130 AS2 family AT3G58190 70.5 4.8e-49 191.4
Cme04g01036 . 4 95 AS2 family AT3G58190 90.2 4.2e-45 178.3
Cme04g01566 . 24 135 AS2 family AT3G58190 69.6 9.7e-42 167.2
Cme04g02065 . 30 148 AS2 family AT3G58190 61.3 9.4e-37 150.6
Cme04g01036 . 1 172 AS2 family AT2G31310 54.3 1.1e-38 156.8
Cme04g01566 . 24 236 AS2 family AT2G42430 56.5 8.6e-55 210.7
Cme04g01036 . 3 94 AS2 family AT2G42430 80.4 8.6e-39 157.5
Cme04g02065 . 29 169 AS2 family AT2G42430 57.4 3.3e-38 155.6
Cme11g02517 . 29 116 AS2 family AT2G42430 81.8 4.3e-38 155.2
Cme06g00253 CCT 16 126 AS2 family AT2G42430 64.0 1.6e-37 153.3
Cme01g01658 . 4 113 AS2 family AT2G42430 66.4 2.1e-37 152.9
Cme06g00253 CCT 24 190 AS2 family AT4G00220 53.0 2.7e-42 169.1
Cme11g02517 . 29 116 AS2 family AT4G00220 86.4 3.8e-41 165.2
Cme11g02516 CCT 70 253 AS2 family AT4G00220 53.4 4.3e-40 161.8
Cme06g00253 CCT 24 197 AS2 family AT2G45420 53.8 2.0e-49 193.0
Cme11g02517 . 29 118 AS2 family AT2G45420 90.0 3.0e-45 179.1
Cme04g01566 . 25 127 AS2 family AT2G45420 77.7 4.0e-42 168.7
Cme04g02065 . 30 136 AS2 family AT2G45420 72.9 2.9e-40 162.5
Cme01g01658 . 11 117 AS2 family AT2G45420 68.2 5.4e-39 158.3
Cme10g00914 . 13 116 AS2 family AT2G45420 64.4 5.1e-37 151.8
Cme04g01036 . 7 95 AS2 family AT2G45420 76.4 1.5e-36 150.2
Cme04g02065 . 30 143 AS2 family AT3G03760 82.5 6.6e-48 188.0
Cme04g01566 . 24 138 AS2 family AT3G03760 67.8 4.8e-38 155.2
Cme06g00253 CCT 16 133 AS2 family AT4G00210 63.9 8.3e-41 164.1
Cme01g01658 . 1 115 AS2 family AT4G00210 60.9 3.3e-37 152.1
Cme11g02517 . 29 118 AS2 family AT4G00210 75.6 5.5e-37 151.4
Cme11g02517 . 29 117 AS2 family AT2G45410 77.5 1.4e-39 159.8
Cme04g01566 . 25 127 AS2 family AT2G45410 67.0 1.7e-37 152.9
Cme10g00914 . 11 117 AS2 family AT5G06080 75.7 8.4e-44 173.7
Cme06g01685 . 61 222 AS2 family AT1G68510 64.7 3.5e-58 221.9
Cme02g01743 . 1 159 AS2 family AT1G68510 61.2 6.9e-54 207.6
Cme10g00257 . 1 136 AS2 family AT1G68510 64.7 1.5e-48 189.9
Cme08g00636 . 1 104 AS2 family AT1G68510 63.5 1.7e-39 159.8
Cme07g00295 . 1 104 AS2 family AT1G68510 64.4 1.0e-36 150.6
Cme06g01685 . 61 358 AS2 family AT1G67100 50.3 3.1e-70 261.9
Cme02g01743 . 1 134 AS2 family AT1G67100 75.7 1.7e-60 229.6
Cme10g00257 . 1 132 AS2 family AT1G67100 66.4 1.6e-50 196.4
Cme08g00636 . 1 110 AS2 family AT1G67100 66.4 3.8e-44 175.3
Cme07g00295 . 1 110 AS2 family AT1G67100 61.8 1.4e-38 156.8
Cme06g01685 . 61 358 AS2 family AT3G02550 57.1 2.4e-79 292.4
Cme02g01743 . 1 236 AS2 family AT3G02550 55.2 9.2e-63 237.3
Cme10g00257 . 1 141 AS2 family AT3G02550 63.4 1.1e-47 187.2
Cme08g00636 . 1 110 AS2 family AT3G02550 64.5 1.9e-39 159.8
Cme08g00636 . 1 232 AS2 family AT5G67420 59.4 1.8e-71 266.2
Cme07g00295 . 1 127 AS2 family AT5G67420 64.4 6.7e-47 184.5
Cme06g01685 . 63 172 AS2 family AT5G67420 68.2 1.1e-44 177.2
Cme02g01743 . 3 112 AS2 family AT5G67420 61.8 2.1e-40 162.9
Cme10g00257 . 3 106 AS2 family AT5G67420 63.5 1.5e-38 156.8
Cme08g00636 . 1 231 AS2 family AT3G49940 60.6 1.5e-70 263.1
Cme07g00295 . 1 127 AS2 family AT3G49940 68.7 4.6e-48 188.3
Cme06g01685 . 63 172 AS2 family AT3G49940 69.1 4.0e-44 175.3
Cme02g01743 . 3 112 AS2 family AT3G49940 62.7 1.6e-40 163.3
Cme10g00257 . 3 123 AS2 family AT3G49940 58.7 4.3e-38 155.2
Cme08g00636 . 1 232 AS2 family AT4G37540 57.4 3.9e-68 255.0
Cme06g01685 . 63 173 AS2 family AT4G37540 65.8 8.2e-42 167.5
Cme02g01743 . 3 113 AS2 family AT4G37540 63.1 4.5e-40 161.8
Cme10g00257 . 3 107 AS2 family AT4G37540 62.9 1.3e-36 150.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009687 1 1 2 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40770 PF03195 LOB 4.50E-34 No_clan Cme TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme01g01658 Cme_Chr01 FPKM 3.57481 3.899024 5.17909 5.344445 8.473831 6.093199 7.915233 8.860569 9.308766 9.749611