Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g01680 ATGGATTCGGCGAGGAGTTGGTTTAATCAGCGTAGAGATAGGTTGAGGGGTTCTACGAAGAAGAAGGATAATAGTATGGGAGAGAATGAGGATTGTACTGCTACTGATCAAATGGATGAAGAAGCGCTTTCTAATATCACTAAGCAGAAGGTTGCTGCGGCAAAGCAGTATATTGAGAATCATTACAAGGAGCAAATGAAGAATCTGCAGGAGAGAAAAGAAAGACGAAATATATTGGAAAAGAAGTTGGCTGATGCTGATGTATCTGAAGAAGATCAAAATAATCTACTGAAGTTTTTAGAGAAGAAGGAAACTGAATACATGCGCCTCCAAAGGCACAAAATGGGAGTTGATGATTTCGATTTACTGACAATTATTGGCAAAGGTGCTTTTGGGGAGGTTCGTGTTTGTAGAGAGAAGACTACAGGTCAGGTGTATGCTATGAAAAAGCTTAAAAAATCAGAGATGCTTCGAAGGGGCCAGGTGGAACATGTGAGAGCTGAAAGAAATCTGCTTGCTGAAGTCGACAGCAATTGTATTGTGAAACTCTATTGTTCGTTTCAAGATGATGAGTTTCTTTATCTTATTATGGAGTACCTACCTGGTGGAGATATGATGACTTTATTGATGAGAAAGGATACTTTGACAGAAGATGAAGCGAGGTTTTATGTTGGGGAGATAGTTTTGGCTATTGAATCTATTCATAAGCACAATTACATTCATAGAGATATTAAGCCTGACAACTTGCTGCTTGATAAATTTGGGCACTTGAGACTCTCAGATTTTGGATTATGCAAACCATTAGATTGCAGTATACTCCGAGAACAAGATTTTGATGTAGTGAATACCCGTACGGGAGCTGGGCAAAATGATGAACGCAATGCAACTCCTCGTACTCAACAAGAACAACTACAACATTGGCAGAAGAATCGAAGAATGCTTGCTTATTCAACAGTTGGAACCCCAGATTATATTGCTCCAGAGGTTTTGTTGAAGAAGGGTTATGGCATGGAATGTGACTGGTGGTCACTTGGAGCTATTATGTATGAAATGCTTGTTGGTTACCCACCTTTTTACTCTGATGATCCAATGTCAACTTGTCGGAAGATAGTGAACTGGAGAACTCATTTGAAGTTCCCTGACGAGGCAAAGCTATCCCTCTTGGCAAAAGATCTCATTAGTAAACTACTATGTAATGTTAACCAGAGGCTCGGTACAAATGGCGCGGATGAAATTAAGGTTCATCCGTGGTTTGAAGGCACTGAATGGGATAGGTTATACCAAATGGAAGCTGCATTTGTTCCTGAGGTTAAAGATGAGCTAGACACTCAAAATTTTGAAAAGTTTGAAGAGTCTGACTCGCAAAGCAGTTCTTCATCTAAAACTGGTCCATGGAGAAAGATGCTCTCATCGAAGGACATCAACTTTGTTGGATACACTTATAAAAACTTTGAAATTGTCAACGATTATCAATTGCCTGGGATGGCTGAATTGAAGAAGAAATGTAGCAAACCAAAAAGACCGTCAATAAAATCACTCTTTGATGGCGAATCGGAGGGAGGTGACGCATCTGATACACCTAGTCATAGTCACCAGCAAACTGGAGGTAGCTTTTCGAACTCAATGACATCTCCTAAACTGGATGATGTTGATATGAGGAAAGAGTCGCTGTAA 1674 40.02 MDSARSWFNQRRDRLRGSTKKKDNSMGENEDCTATDQMDEEALSNITKQKVAAAKQYIENHYKEQMKNLQERKERRNILEKKLADADVSEEDQNNLLKFLEKKETEYMRLQRHKMGVDDFDLLTIIGKGAFGEVRVCREKTTGQVYAMKKLKKSEMLRRGQVEHVRAERNLLAEVDSNCIVKLYCSFQDDEFLYLIMEYLPGGDMMTLLMRKDTLTEDEARFYVGEIVLAIESIHKHNYIHRDIKPDNLLLDKFGHLRLSDFGLCKPLDCSILREQDFDVVNTRTGAGQNDERNATPRTQQEQLQHWQKNRRMLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPMSTCRKIVNWRTHLKFPDEAKLSLLAKDLISKLLCNVNQRLGTNGADEIKVHPWFEGTEWDRLYQMEAAFVPEVKDELDTQNFEKFEESDSQSSSSSKTGPWRKMLSSKDINFVGYTYKNFEIVNDYQLPGMAELKKKCSKPKRPSIKSLFDGESEGGDASDTPSHSHQQTGGSFSNSMTSPKLDDVDMRKESL 557
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 23029684 23045229 - MELO3C012751.2.1 Cme01g01680 318656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g01680 557 Pfam Protein kinase C terminal domain 437 481 IPR017892 GO:0004674|GO:0005524|GO:0006468
Cme01g01680 557 SMART serkin_6 120 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme01g01680 557 Gene3D Transferase(Phosphotransferase) domain 1 204 436 - -
Cme01g01680 557 MobiDBLite consensus disorder prediction 523 546 - -
Cme01g01680 557 Coils Coil 62 82 - -
Cme01g01680 557 ProSiteProfiles Protein kinase domain profile. 120 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme01g01680 557 MobiDBLite consensus disorder prediction 1 35 - -
Cme01g01680 557 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 1 523 - -
Cme01g01680 557 MobiDBLite consensus disorder prediction 501 557 - -
Cme01g01680 557 Gene3D Phosphorylase Kinase; domain 1 118 447 - -
Cme01g01680 557 Pfam Protein kinase domain 122 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme01g01680 557 ProSitePatterns Protein kinases ATP-binding region signature. 126 149 IPR017441 GO:0005524
Cme01g01680 557 ProSitePatterns Serine/Threonine protein kinases active-site signature. 239 251 IPR008271 GO:0004672|GO:0006468
Cme01g01680 557 SMART pkinase_C_6 419 483 IPR000961 GO:0004674|GO:0005524|GO:0006468
Cme01g01680 557 ProSiteProfiles AGC-kinase C-terminal domain profile. 419 491 IPR000961 GO:0004674|GO:0005524|GO:0006468
Cme01g01680 557 SUPERFAMILY Protein kinase-like (PK-like) 93 471 IPR011009 -
Cme01g01680 557 PANTHER SERINE/THREONINE-PROTEIN KINASE 1 523 - -
Cme01g01680 557 CDD STKc_NDR_like 118 482 - -
Cme01g01680 557 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01680 Cme-Chr1:23029684 Cme05g00575 Cme-Chr5:5821826 0 dispersed
Cme01g01680 Cme-Chr1:23029684 Cme02g00269 Cme-Chr2:2258759 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64619 PF00069 Pkinase 6.30E-63 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g01680 K08790 - csv:101221720 1091.26