Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g01718 ATGCTTCAAAGCCTCTATCTAAGTATAAACTCTTTGACTGGAACCATTCCGCTTGAACTTGGTTACAGCTCCTCTCTTTCTGATATTGATTTGAGTAGCAATCTTTTAACGGGAGTTCTTCCACCTTCGATCTGGAATCTGTGTGATAAACTTGTTTCTGTCAGACTTCATGGCAATTCTTTATCTGGGTCTCTGCCGGAGCCGGCTTTACCAAACTCCACCTGCAGAAATCTGGAGGCTTTTGATTTAGGCAACAATCAGATTTCAGGTACGTTCCCAGAATTCATTACTAGATTTCCGGGTCTTAAAGAGCTTGATCTTGGGAAAAATTTGTTGTTTGGACAAATCCCTCAGAGCTTAGGCCAGCTAGAGCTGGAGAAGTTGAACCTTTCAAACAACAATTTCAGTGGAATATTGCCTGTTTTTAGTAACTCAAAGTTTGGTGTTGAGGCTTTTGAAGGGAATAGTCCTGGGCTTTGTGGGGAGCCTTTGAAAAGCTGTGCAGTACCTTCTCATTTGAGTTCAGGCGCCATTGCTGGCCTTGTTATTGGCTTGATGACTGGCACAGTTGTTTTAGCTTCGTTGCTTATTGGTTATATGCAAAACAAGAAGAAGAGTAGTAGTGAGAGTGAAGATGAGATTGATGAAGGAGAAGATGAAGAAAATGGTGGCAGTGTCGGTGCAGGCGGTGAAGGAAAACTCATTTTATTTCAGGGTGGCGAGCATCTGACATTGGATGATGTCTTGAATGCTACGGGGCAAGTTATGGAAAAAACAAGCTATGGCACTATATATAAGGCAAAGCTTGCTGATGGAGGGACCATTGCTCTGAGACTGCTGAGGGAAGGTAGTTGCAAAGACAGAAATTCTTGCTTGTCTGTGATTAAACAATTGGGAAAGATTCGCCATGAGAATTTGATTCCTTTGAGAGCTTTCTATCAAGGAAAGAGAGGAGAAAAGCTCCTCATTTACGACTATCTGCCAATCAGAACTTTACATGATTTTCTACATGAATCTAGAGCAGGAAAACCAGTGTTGAACTGGGCTAGGAGGCACAAGATTGCATTAGGCATCGCCCGGGGATTAGCCCATCTTCACACAGGTCTTGAAGTGCCCATTACACATGGTAACATTAGATCAAAAAATGTGCTTGTGGATGACTTCTTTGCGGCGAGACTGACAGAGTTCGGGCTAGACAAGCTAATGATCCCATCGGTAGCCGATGAAATTGTCTCGCTGGCAAAATCAGACGGGTACAAGGCACCGGAGCTGCAACGGATGAAGAAATGCAATTCAAGAACAGATGTGTATGCATTTGGAATCTTATTATTGGAAATTCTGATTGGGAAGAAACCAGGAAAAAGTGGAAGAAATGGAGAGTTTGTGGATCTGCCATCAATGGTGAAAGTGGCAGTTCTAGAGGAGACAACGATGGACGTTTTCGACGTGGAGGTTTTGAAAGGGATTAGAAGTCCAATGGAAGATGGAATTGTACAGGCTTTGAAGCTTGCAATGGGTTGCTGTGCTCCAGTGGCTTCAGTAAGACCTTCCATCGATGAAGTTGTGAAGCAGTTGGAAGAGAACAGACCAAGAAACAGATCTGCTCTATACAGCCCAACAGAAACAAGAAGTGAAATCGGTACCCCATTTTGA 1653 43.25 MLQSLYLSINSLTGTIPLELGYSSSLSDIDLSSNLLTGVLPPSIWNLCDKLVSVRLHGNSLSGSLPEPALPNSTCRNLEAFDLGNNQISGTFPEFITRFPGLKELDLGKNLLFGQIPQSLGQLELEKLNLSNNNFSGILPVFSNSKFGVEAFEGNSPGLCGEPLKSCAVPSHLSSGAIAGLVIGLMTGTVVLASLLIGYMQNKKKSSSESEDEIDEGEDEENGGSVGAGGEGKLILFQGGEHLTLDDVLNATGQVMEKTSYGTIYKAKLADGGTIALRLLREGSCKDRNSCLSVIKQLGKIRHENLIPLRAFYQGKRGEKLLIYDYLPIRTLHDFLHESRAGKPVLNWARRHKIALGIARGLAHLHTGLEVPITHGNIRSKNVLVDDFFAARLTEFGLDKLMIPSVADEIVSLAKSDGYKAPELQRMKKCNSRTDVYAFGILLLEILIGKKPGKSGRNGEFVDLPSMVKVAVLEETTMDVFDVEVLKGIRSPMEDGIVQALKLAMGCCAPVASVRPSIDEVVKQLEENRPRNRSALYSPTETRSEIGTPF 550
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 23994347 23996701 - MELO3C020998.2.1 Cme01g01718 318694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g01718 550 Gene3D Transferase(Phosphotransferase) domain 1 328 543 - -
Cme01g01718 550 Coils Coil 200 220 - -
Cme01g01718 550 ProSiteProfiles Protein kinase domain profile. 250 550 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme01g01718 550 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 2 550 - -
Cme01g01718 550 SUPERFAMILY Protein kinase-like (PK-like) 255 526 IPR011009 -
Cme01g01718 550 Pfam Protein tyrosine and serine/threonine kinase 254 525 IPR001245 GO:0004672|GO:0006468
Cme01g01718 550 Gene3D Phosphorylase Kinase; domain 1 235 326 - -
Cme01g01718 550 SUPERFAMILY L domain-like 2 142 - -
Cme01g01718 550 Pfam Leucine rich repeat 76 135 IPR001611 GO:0005515
Cme01g01718 550 MobiDBLite consensus disorder prediction 206 227 - -
Cme01g01718 550 PANTHER KINASE-LIKE PROTEIN TMKL1-RELATED 2 550 - -
Cme01g01718 550 Gene3D Ribonuclease Inhibitor 1 173 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01718 Cme-Chr1:23994347 Cme10g01191 Cme-Chr10:12091673 5.14E-10 dispersed
Cme09g01576 Cme-Chr9:20678018 Cme01g01718 Cme-Chr1:23994347 1.52E-55 dispersed
Cme01g01718 Cme-Chr1:23994347 Cme05g01954 Cme-Chr5:28090976 1.05E-79 transposed
Cme01g01718 Cme-Chr1:23994347 Cme02g01293 Cme-Chr2:18860631 8.42E-79 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64621 PF07714 PK_Tyr_Ser-Thr 4.60E-25 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g01718 - - cmo:103497530 1036.56