Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g01744 ATGTTCCTCGAGTTTAAAGAGGAACTAGATAACCTTGCGGGAGAGTCGTCGTTGGTGGGCGGCAATTCGGATACTTGTTACCATCTACGACTTCAACTCAATGATCAAGCAATGAATAGGTTCATTGAGCATAAAATGGTCAACACCTTTAAAGAGTTTCAGGGAGGTTGTCATAGTTTTTCATCTCATGGGAAAGCAGCAAAAAGAACAAAGAGTGGTAGAAGGGAACAATCTGTTTCATTACATTCACGTAGTAATAAACATAATCAACAACAACATCAACCACTTCCACAACAACATCACCATCATGCTCCTGCTCCTCCTCCTCGTCCTACTCCTACAGAAAATCCAAAAGCAAACCCTGTGCAAAAGGAAGCTATAGAGAAAGAAAAAGAAAAAGAGAAAGAGAAAGAGAAAGAGAAAGAGATTGGGGAAAAGAATAACATTGCAGCACAAACCTTCACTTTTAGAGAGTTGGCCACTGCTACAAAGAATTTCCGTCAAGAATGTCTCATTGGTGAAGGAGGTTTTGGGAGAGTTTATAAAGGCAAACTCGATAAAACTAACCAGGTGGTGGCAGTGAAGCAGCTGGATAGAAATGGATTGCAAGGGAACAGAGAGTTTCTTGTGGAAGTTCTGATGCTAAGCCTTTTACACCATCAAAACCTTGTCAATCTCATTGGCTATTGTGCTGATGGTGATCAAAGACTCTTGGTCTATGAGTACATGCCTTTGGGATCTTTAGAAGATCATCTGCTAGATCTTCCATTTGAAAGAAAGGCATTGGATTGGGGAACAAGGATGAAAGTAGGGTTGGGAGCAGCAAAAGGGTTGGAGTACTTGCATGACAAAGCCAACCCACCAGTGATATATAGAGACTTGAAAGCATCAAACATCCTATTGGACAATGATTTCAATGCAAAGCTATCAGATTTTGGACTTGCAAAGCTTGGTCCTGTTGGGGACAAATCCCATGTTTCCTCTAGAGTTATGGGAACCTATGGATATTGTGCTCCTGAGTATCAGAGGACTGGCCAACTCACTCCAAAATCTGATGTTTATAGCTTTGGAGTTGTCTTATTGGAACTCATCACCGGCAAGAGAGTTATTGACAACACTCGTCCAGCTAAACAACAAAACTTGGTCGCTTGGGCATATCCAATATTTAAGGAACCAACTAGATTCAAGGAGTTGGCAGATCCTCTTCTTGGTGGAGACTTTCCTGTGAGGGGTCTGAACCAAGCGGTTGCGGTTGCCGCCATGTGCCTTCATGAGGAAGCAACAGCCCGACCATTGATTAGTGACGTCGTCACTGCTCTCAGCTTCTTGGGAGCAGAAACCACGCAATCATCACCGTCTTCATCGTCAGGTGATGTCCCATCACCAATTGATGATCAAGATCTTATCAATCTATCCAACAAACCCATCGACTATTTTCACGACGACGAAACAGCTGAGGCACGCCAAAGAGCAGTTGCAGAAGCCATCGAATGGGGTTCAACGTCCAAGCAAAATGCTGCTGCTTCACGCCCGGGAAGTCATTCTTCCTTGTAA 1554 43.44 MFLEFKEELDNLAGESSLVGGNSDTCYHLRLQLNDQAMNRFIEHKMVNTFKEFQGGCHSFSSHGKAAKRTKSGRREQSVSLHSRSNKHNQQQHQPLPQQHHHHAPAPPPRPTPTENPKANPVQKEAIEKEKEKEKEKEKEKEIGEKNNIAAQTFTFRELATATKNFRQECLIGEGGFGRVYKGKLDKTNQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHQNLVNLIGYCADGDQRLLVYEYMPLGSLEDHLLDLPFERKALDWGTRMKVGLGAAKGLEYLHDKANPPVIYRDLKASNILLDNDFNAKLSDFGLAKLGPVGDKSHVSSRVMGTYGYCAPEYQRTGQLTPKSDVYSFGVVLLELITGKRVIDNTRPAKQQNLVAWAYPIFKEPTRFKELADPLLGGDFPVRGLNQAVAVAAMCLHEEATARPLISDVVTALSFLGAETTQSSPSSSSGDVPSPIDDQDLINLSNKPIDYFHDDETAEARQRAVAEAIEWGSTSKQNAAASRPGSHSSL 517
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 24422995 24436608 - MELO3C021009.2.1 Cme01g01744 318720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g01744 517 SUPERFAMILY Protein kinase-like (PK-like) 152 451 IPR011009 -
Cme01g01744 517 Pfam Protein kinase domain 168 435 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme01g01744 517 ProSiteProfiles Protein kinase domain profile. 166 443 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme01g01744 517 MobiDBLite consensus disorder prediction 101 116 - -
Cme01g01744 517 MobiDBLite consensus disorder prediction 54 144 - -
Cme01g01744 517 ProSitePatterns Serine/Threonine protein kinases active-site signature. 289 301 IPR008271 GO:0004672|GO:0006468
Cme01g01744 517 ProSitePatterns Protein kinases ATP-binding region signature. 172 195 IPR017441 GO:0005524
Cme01g01744 517 MobiDBLite consensus disorder prediction 122 144 - -
Cme01g01744 517 PANTHER OS07G0668900 PROTEIN 102 506 - -
Cme01g01744 517 MobiDBLite consensus disorder prediction 83 98 - -
Cme01g01744 517 Coils Coil 122 147 - -
Cme01g01744 517 CDD STKc_IRAK 172 440 - -
Cme01g01744 517 MobiDBLite consensus disorder prediction 447 461 - -
Cme01g01744 517 Gene3D Phosphorylase Kinase; domain 1 123 242 - -
Cme01g01744 517 SMART serkin_6 166 443 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme01g01744 517 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL26-RELATED 102 506 - -
Cme01g01744 517 Gene3D Transferase(Phosphotransferase) domain 1 243 458 - -
Cme01g01744 517 MobiDBLite consensus disorder prediction 447 469 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01744 Cme-Chr1:24422995 Cme11g02350 Cme-Chr11:30503519 6.42E-174 dispersed
Cme01g01744 Cme-Chr1:24422995 Cme06g00702 Cme-Chr6:4544201 5.56E-176 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64622 PF00069 Pkinase 5.60E-47 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g01744 - - cmo:103497640 932.554