Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g01754 ATGGGATTTCATCTCTTGTGGGTTGGCTTCTTCCTTTGCTGTGAGTTTTGGGTTCTTTCCTTGAGTGATGATCAAGATGGATTCCTAAGCTTATCCTGTGGAGCAACTACCACCTTCACTGACTCCTCCAACATTTTATGGATTCCGGACGTCGATTACATCAGCTCTGGTAACACCTCAATCATCGAAAATGGCAAAGGCGGATCCTTTTCCAGTGACCATGTTCGGTTCTTCCCCGACCCCCAAGCTCGAAATTGTTACAAGCTACCACTTAAGAATAGCTCCTCATCAGTTCTCATTAGAGCTAAGTTTGTGTACAAAAACTATGACAAGGTTGAGAAGCCCCCTGCATTCTTTGTTTCTCTTGGGACAGCCATAACTAGCATTGTGAACCTTACTTTTCATGACCCTTGGACCGAGGAGTTTGTTTGGCCAGTTAACAAGGAAACTGCCTCCTTTTGTTTACACTCCATTCCTCAGGGTGGTAGCCCTTTGATATCTTCCATTGAACTTCGGCCCCTACCGCAAGGAGCTTACGAAGATGATGGCTTACTTCAGAGTCAGGCTCTAAGAAAGTCGTATCGAATCAATTGCGGTTACACCAGTGGATCTCTCAGGTACCCGATTGATCCATACGACCGAATATGGGGCGCGGACCGGAACTTCAAGCCATTTCATGTGTCATCGGGGTTCAAAGTTGAGGCCAACTTCGATGTGATAGAAGTGAAGGAAGCTCCACCAGCTGCAGTTGTTGAAACAGCAAGAGTTTTGACAAGAAGAAAAGAGCTAAGCTACAACCTTCCACTTGGAAAGGAAGAAGGAGATTACTATGTGATTCTTTACTTTGGTGGGATTCTTGCTGTTCATCCTTCATTTGATGTGTTGATCAATGGGAGAGTTATTGAATCAAATTACACTTTTGAAAAGGGAGAAATTAGGGCTTTGTATATCATTCAACACCAAATCAAGAACTTGATTATCACTCTCAAGAGTGTTAAATTCTATTCTCAAATCAATGCTATTGAGGTCTATCAGATTGTTCATCTTCCTTTGGAAGCTTCATCAACCACAGTTTCAGCCCTTGAGGTGATTAATCAATCTATTGGTTTGAATTTGGAATGGGAAGATGATCCATGTTCTCCAAAAACATGGGATCATGTTGGATGTGAAGGAAATCTTGTTACATCTCTAGACCTTTCCAACATCAACTTGAGGACGATCAGCCCGACGTTTGGCGACATTCTCGATCTCAAAATATTGGATTTGCACAACACTTCCCTTTCGGGAGAAATACAAAATTTGGGCAGTCTGACTCATCTTGAGAATTTGAATTTGAGTTTCAACAAGCTAACTTCATTTGGGTCAGATTTGAAGAACCTTAGCAACCTCAAATTTCTGGACTTGCAGAACAACAGTCTCCAGGGAATTGTTCCAGATGGCTTGGGAGAACTTGAAGATCTTCAATTATTGAATTTGGAGAACAATAGGCTGGAAGGCACCCTCCCATTGTCTTTGAACAAAGGAAGTCTTGAAATTAGAACAATAGGAAACCCTTGTTTGTCATTCTCCACAATGACATGCAATGATGTGTCATCAAATAATAATAATCCAGCCATTGAAACACCACAAGTCACAATTGTTCCTGAGAAGAAGAAGAAGAAGGAGGAGGAGATGAGCAGTGATCATAATAATAATTATCATTTGCCTATCATTATTATTATTGTTTCTGCACTTGCTGCTGCTTTATTAGTTCTCATCACTCTCTCCCTTTCACTTTTACTCTACTTGAGGAATATCCACTCTCAACAACACACAACATCTCAACGACTCACATACTCAACAAAAGCAGCAATGGAGCTAAGGAATTGGAACAGTGCAAAAGTATTCTCCTACAAGGAGGTAAAGTCGGCTACAAATAACTTCAAGGAAGTGATTGGAAGAGGAAGCTTTGGATCTGTTTATCTTGGAAAGCTTCCCGACGGTAAACTTGTGGCTGTCAAAGTAAGGTTTGACAAAACCCAACTTGGGACTGAGTCCTTTATCAATGAGGTTCACCTCTTGTCTCAAATTCGTCATCAAAATCTAGTTTGTTTGGAAGGATTTTGTAATGAATCGAAACGACAAATACTTGTTTATGAGTATTTACCTGGTGGATCTTTGGCTGATCACATTTATGGCAAGAACAGAAAAAATGTTTCACTTAGTTGGATTAGAAGACTCAAAGTTGCTGTTGATGCAGCAAAAGGGTTGGACTATTTACACAATGGAAGTGAGCCAAGAATAATCCATAGAGATGTGAAGTGTAGTAACATTCTTTTGGATATGGAAATGAATGCAAAAGTTTGTGATTTTGGGCTTTCCAAGCAAATTTCACATCCTGATGCAACTCATGTCACCACTGTTGTCAAAGGCACTGCTGGCTATTTGGATCCCGAGTACTATTCCACACAACAATTAACCGAAAAGAGTGACGTGTATAGTTTTGGAGTTGTATTGTTAGAGTTGATTTGTGGAAGAGAGCCCTTAAGTCGCACAGGAACTCCAGATTCATTCAATTTGGTGCTATGGGCAAAGCCCTACTTACAAGCAGGTGCATTTGAGATAGTAGATGAAAATTTGAGAGGAAGTTTTGATGTTGAAAGCATGAAAAAGGCAGCTCTTGTTGCTATAAGATGTGTGGATAGAGATGCTTCTCAAAGGCCTAATATTGGACAAGTTTTGGCTGACCTAAAACAAGCTTATGATGCTCAATTTGCATATCTCTCTACTTTTGACCATTGA 2781 40.52 MGFHLLWVGFFLCCEFWVLSLSDDQDGFLSLSCGATTTFTDSSNILWIPDVDYISSGNTSIIENGKGGSFSSDHVRFFPDPQARNCYKLPLKNSSSSVLIRAKFVYKNYDKVEKPPAFFVSLGTAITSIVNLTFHDPWTEEFVWPVNKETASFCLHSIPQGGSPLISSIELRPLPQGAYEDDGLLQSQALRKSYRINCGYTSGSLRYPIDPYDRIWGADRNFKPFHVSSGFKVEANFDVIEVKEAPPAAVVETARVLTRRKELSYNLPLGKEEGDYYVILYFGGILAVHPSFDVLINGRVIESNYTFEKGEIRALYIIQHQIKNLIITLKSVKFYSQINAIEVYQIVHLPLEASSTTVSALEVINQSIGLNLEWEDDPCSPKTWDHVGCEGNLVTSLDLSNINLRTISPTFGDILDLKILDLHNTSLSGEIQNLGSLTHLENLNLSFNKLTSFGSDLKNLSNLKFLDLQNNSLQGIVPDGLGELEDLQLLNLENNRLEGTLPLSLNKGSLEIRTIGNPCLSFSTMTCNDVSSNNNNPAIETPQVTIVPEKKKKKEEEMSSDHNNNYHLPIIIIIVSALAAALLVLITLSLSLLLYLRNIHSQQHTTSQRLTYSTKAAMELRNWNSAKVFSYKEVKSATNNFKEVIGRGSFGSVYLGKLPDGKLVAVKVRFDKTQLGTESFINEVHLLSQIRHQNLVCLEGFCNESKRQILVYEYLPGGSLADHIYGKNRKNVSLSWIRRLKVAVDAAKGLDYLHNGSEPRIIHRDVKCSNILLDMEMNAKVCDFGLSKQISHPDATHVTTVVKGTAGYLDPEYYSTQQLTEKSDVYSFGVVLLELICGREPLSRTGTPDSFNLVLWAKPYLQAGAFEIVDENLRGSFDVESMKKAALVAIRCVDRDASQRPNIGQVLADLKQAYDAQFAYLSTFDH 926
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 24605182 24615968 + MELO3C021017.2.1 Cme01g01754 318730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g01754 926 SUPERFAMILY Protein kinase-like (PK-like) 611 909 IPR011009 -
Cme01g01754 926 SMART serkin_6 639 914 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme01g01754 926 SUPERFAMILY L domain-like 361 507 - -
Cme01g01754 926 PANTHER OS07G0107800 PROTEIN-RELATED 11 923 - -
Cme01g01754 926 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 11 923 - -
Cme01g01754 926 Gene3D Phosphorylase Kinase; domain 1 612 714 - -
Cme01g01754 926 CDD STKc_IRAK 645 912 - -
Cme01g01754 926 Gene3D Ribonuclease Inhibitor 358 512 IPR032675 -
Cme01g01754 926 Pfam Leucine rich repeat 439 497 IPR001611 GO:0005515
Cme01g01754 926 ProSiteProfiles Leucine-rich repeat profile. 439 461 IPR001611 GO:0005515
Cme01g01754 926 SMART LRR_typ_2 484 508 IPR003591 -
Cme01g01754 926 SMART LRR_typ_2 437 459 IPR003591 -
Cme01g01754 926 SMART LRR_typ_2 460 483 IPR003591 -
Cme01g01754 926 Pfam Protein tyrosine and serine/threonine kinase 641 909 IPR001245 GO:0004672|GO:0006468
Cme01g01754 926 Gene3D - 191 347 - -
Cme01g01754 926 Pfam Malectin-like domain 31 346 IPR024788 -
Cme01g01754 926 ProSitePatterns Serine/Threonine protein kinases active-site signature. 761 773 IPR008271 GO:0004672|GO:0006468
Cme01g01754 926 ProSiteProfiles Protein kinase domain profile. 639 921 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme01g01754 926 ProSitePatterns Protein kinases ATP-binding region signature. 645 667 IPR017441 GO:0005524
Cme01g01754 926 Gene3D Transferase(Phosphotransferase) domain 1 715 922 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01754 Cme-Chr1:24605182 Cme01g02881 Cme-Chr1:35543006 2.57E-118 dispersed
Cme02g00934 Cme-Chr2:13230987 Cme01g01754 Cme-Chr1:24605182 1.64E-56 dispersed
Cme11g01821 Cme-Chr11:26411452 Cme01g01754 Cme-Chr1:24605182 6.14E-36 dispersed
Cme01g01754 Cme-Chr1:24605182 Cme04g01159 Cme-Chr4:15829451 3.55E-119 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64623 PF12819 Malectin_like 3.10E-53 CL0202 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g01754 - - csv:101203637 1711.43