Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g01812 ATGGAAAACACTAAACTTTCATTAGCTCTCTTTGCCACTTTACTCCTCACAAATGCTATTATTGTTAGAGCAAATTCTAATGAAAATGGTGTCATGGAAACCTCATGTGCCATTACTCTTTATCCACAACTATGTCACTCAACAATATCCTCCATCATTGGTACATCTAATTTGTTGAGTTTGAAAGATATCGTTCAATTGTCATTGAGTGTGGCTATGGATGCAGCTAAGCTTAACAATGGAAACATAAAAAAACTTACGATGTCCTTTAACAACGTTAGTAAACGAGACAGGATTCCTCTTCATGATTGTGTCAAATCAACCGACAGGACGATTTATGAGCTTGACAAGGCTATAGAGGATTTTCGTGAGTATCCGAACAAGAAATCTCTTACTTCATATGCCGATGACCTCAAAACTTTCCTCAGTTCTGCCATTACTAATCAGGTGACTTGTTTGGATGGATTCCAAGATGACAAAACAGAGAAAGGGGTTTTGAGAGTTATTGAGAACACTCATATTCATGCGACGAAGTTGTGTAGTAATGCATTGGCTTTGGTTAAAAAATTGACAACAGAAATTGCCTTAATAGATGAGAAAAACTTGGTGGTCCATGACTTCCCTTATAAGATAACTTCGATATCCTCCCAAATAAATGACCTCAAAATTGTCCTATTTTCCAATCAGGAGGAAGGTGAGAATGGAAGAAGGGAGGATTTGGAAAATGGAATAAAGTGGCCAGAATGGATGTCAATCCAAGACCAGAAGCTTTTAGAATCATCGTCGTCAGAAGCGGCGGCGGATGTGGTAGTGGCGGTGGATGGAAGCGGAAATTATAAAACGGTGTCGGAAGCAGTGGAGGCGGCGCCGAGCAAGAACAGCAAAAGATATATAATAAAAATAAAGGCTGGAGTTTACAGGGAAAATGTTGACGTACCAAGTAGTAAAAGGAATATTATGTTTTGGGGAGATGGAAGATCCAACACCATTATCACTGCTTATAGAAGTCATGGGAGTGGCTGGTCAACCTTCAATTCCGCCACCGTCGTTGCTGTGGGGGATGGATTCTTAGCTCGAGACATATCCTTTGAAAACACAGCCGGACCAGCCAACGGCCAAGCTGTAGCCCTCCGTGTTGGCTCAGATCACTCAGCCTTCTACCGCTGTGGCATGCTTGGCTACCAAGACACTCTCTATGTCCACTCGAACCGTCAATTCTTCGTCAACTGCGTTGTAGCAGGAACAGTCGACTTCGTCTTTGGAAACGCAGCAGCTGTAATCCAAAACTCCGACCTCACCCCTCGCAAACCAGGCCCTAACCAAAGGAACATGGTGACGGCACAATCGAGAACTGACTTGAATCAAAACACGGGAATCGTGATCCAAAAGTGTAGGATAAAAGCGACGTCAGACTTGGAGCCAGTGATAAAAGAATTCCCAAGCTTCCTTGGGAGACCATGGGAGGAATATGCTAGGGTTGTGGTAATGCAAACGACAATAACCAACGTGATAGACAAAAAGGGGTGGTCGACATGGAATGGTGACATAAAGAAACCCTACTTTGCAGAATATGACAACAATGGAGCTGGTGCTAATACTTCTGGTAGAGTGCCATGGTCTCTTGTTATTAATGAAGCTGATGCTAAGACCTTCACGGCTGAAAGATTCATTGGCGGTGCTGATTGGCTTCCATCTACTGGCTTCCCTTATCAGCTTGGTCTCTATAACTGA 1731 43.04 MENTKLSLALFATLLLTNAIIVRANSNENGVMETSCAITLYPQLCHSTISSIIGTSNLLSLKDIVQLSLSVAMDAAKLNNGNIKKLTMSFNNVSKRDRIPLHDCVKSTDRTIYELDKAIEDFREYPNKKSLTSYADDLKTFLSSAITNQVTCLDGFQDDKTEKGVLRVIENTHIHATKLCSNALALVKKLTTEIALIDEKNLVVHDFPYKITSISSQINDLKIVLFSNQEEGENGRREDLENGIKWPEWMSIQDQKLLESSSSEAAADVVVAVDGSGNYKTVSEAVEAAPSKNSKRYIIKIKAGVYRENVDVPSSKRNIMFWGDGRSNTIITAYRSHGSGWSTFNSATVVAVGDGFLARDISFENTAGPANGQAVALRVGSDHSAFYRCGMLGYQDTLYVHSNRQFFVNCVVAGTVDFVFGNAAAVIQNSDLTPRKPGPNQRNMVTAQSRTDLNQNTGIVIQKCRIKATSDLEPVIKEFPSFLGRPWEEYARVVVMQTTITNVIDKKGWSTWNGDIKKPYFAEYDNNGAGANTSGRVPWSLVINEADAKTFTAERFIGGADWLPSTGFPYQLGLYN 576
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 25634983 25641483 - MELO3C021069.2.1 Cme01g01812 318788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g01812 576 TIGRFAM PME_inhib: pectinesterase inhibitor domain 6 191 IPR006501 GO:0004857
Cme01g01812 576 CDD PMEI-like_3 34 192 - -
Cme01g01812 576 Gene3D - 262 574 IPR012334 -
Cme01g01812 576 SUPERFAMILY Pectin lyase-like 263 573 IPR011050 -
Cme01g01812 576 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 3 27 573 - -
Cme01g01812 576 Gene3D Invertase/pectin methylesterase inhibitor family protein 28 192 IPR035513 -
Cme01g01812 576 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 30 191 IPR035513 -
Cme01g01812 576 Pfam Pectinesterase 268 559 IPR000070 GO:0030599|GO:0042545
Cme01g01812 576 PANTHER PECTINESTERASE 27 573 - -
Cme01g01812 576 SMART PMEI_2 27 186 IPR006501 GO:0004857
Cme01g01812 576 ProSitePatterns Pectinesterase signature 2. 412 421 IPR033131 -
Cme01g01812 576 Pfam Plant invertase/pectin methylesterase inhibitor 32 186 IPR006501 GO:0004857
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01812 Cme-Chr1:25634983 Cme04g01402 Cme-Chr4:19874958 0 dispersed
Cme01g01815 Cme-Chr1:25665731 Cme01g01812 Cme-Chr1:25634983 5.30E-63 dispersed
Cme01g01812 Cme-Chr1:25634983 Cme01g01813 Cme-Chr1:25634983 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g01812 K01051 - csv:101221055 1004.59