Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g01813 ATGGAAAACACTAAACTTTCATTAGCTCTCTTTGCCACTTTACTCCTCACAAATGCTATTATTGTTAGAGCAAATTCTAATGAAAATGGTGTCATGGATAATATTTCGAGTCTCATAGAAACCTCATGTGCCATTACTCTTTATCCACAACTATGTCACTCAACAATATCCTCCATCATTGGTACATCTAATTTGTTGAGTTTGAAAGATATCGTTCAATTGTCATTGAGTGTGGCTATGGATGCAGCTAAGCTTAACAATGGAAACATAAAAAAACTTACGATGTCCTTTAACAACGTTAGTAAACGAGACAGGATTCCTCTTCATGATTGTGTCAAATCAACCGACAGGACGATTTATGAGCTTGACAAGGCTATAGAGGATTTTCGTGAGTATCCGAACAAGAAATCTCTTACTTCATATGCCGATGACCTCAAAACTTTCCTCAGTTCTGCCATTACTAATCAGGTGACTTGTTTGGATGGATTCCAAGATGACAAAACAGAGAAAGGGGTTTTGAGAGTTATTGAGAACACTCATATTCATGCGACGAAGTTGTGTAGTAATGCATTGGCTTTGGTTAAAAAATTGACAACAGAAATTGCCTTAATAGATGAGAAAAACTTGGTGGTCCATGACTTCCCTTATAAGATAACTTCGATATCCTCCCAAATAAATGACCTCAAAATTGTCCTATTTTCCAATCAGGAGGAAGGTGAGAATGGAAGAAGGGAGGATTTGGAAAATGGAATAAAGTGGCCAGAATGGATGTCAATCCAAGACCAGAAGCTTTTAGAATCATCGTCGTCAGAAGCGGCGGCGGATGTGGTAGTGGCGGTGGATGGAAGCGGAAATTATAAAACGGTGTCGGAAGCAGTGGAGGCGGCGCCGAGCAAGAACAGCAAAAGATATATAATAAAAATAAAGGCTGGAGTTTACAGGGAAAATGTTGACGTACCAAGTAGTAAAAGGAATATTATGTTTTGGGGAGATGGAAGATCCAACACCATTATCACTGCTTATAGAAGTCATGGGAGTGGCTGGTCAACCTTCAATTCCGCCACCGTCGTTGCTGTGGGGGATGGATTCTTAGCTCGAGACATATCCTTTGAAAACACAGCCGGACCAGCCAACGGCCAAGCTGTAGCCCTCCGTGTTGGCTCAGATCACTCAGCCTTCTACCGCTGTGGCATGCTTGGCTACCAAGACACTCTCTATGTCCACTCGAACCGTCAATTCTTCGTCAACTGCGTTGTAGCAGGAACAGTCGACTTCGTCTTTGGAAACGCAGCAGCTGTAATCCAAAACTCCGACCTCACCCCTCGCAAACCAGGCCCTAACCAAAGGAACATGGTGACGGCACAATCGAGAACTGACTTGAATCAAAACACGGGAATCGTGATCCAAAAGTGTAGGATAAAAGCGACGTCAGACTTGGAGCCAGTGATAAAAGAATTCCCAAGCTTCCTTGGGAGACCATGGGAGGAATATGCTAGGGTTGTGGTAATGCAAACGACAATAACCAACGTGATAGACAAAAAGGGGTGGTCGACATGGAATGGTGACATAAAGAAACCCTACTTTGCAGAATATGACAACAATGGAGCTGGTGCTAATACTTCTGGTAGAGTGCCATGGTCTCTTGTTATTAATGAAGCTGATGCTAAGACCTTCACGGCTGAAAGATTCATTGGCGGTGCTGATTGGCTTCCATCTACTGGCTTCCCTTATCAGCTTGGTCTCTATAACTGA 1752 42.87 MENTKLSLALFATLLLTNAIIVRANSNENGVMDNISSLIETSCAITLYPQLCHSTISSIIGTSNLLSLKDIVQLSLSVAMDAAKLNNGNIKKLTMSFNNVSKRDRIPLHDCVKSTDRTIYELDKAIEDFREYPNKKSLTSYADDLKTFLSSAITNQVTCLDGFQDDKTEKGVLRVIENTHIHATKLCSNALALVKKLTTEIALIDEKNLVVHDFPYKITSISSQINDLKIVLFSNQEEGENGRREDLENGIKWPEWMSIQDQKLLESSSSEAAADVVVAVDGSGNYKTVSEAVEAAPSKNSKRYIIKIKAGVYRENVDVPSSKRNIMFWGDGRSNTIITAYRSHGSGWSTFNSATVVAVGDGFLARDISFENTAGPANGQAVALRVGSDHSAFYRCGMLGYQDTLYVHSNRQFFVNCVVAGTVDFVFGNAAAVIQNSDLTPRKPGPNQRNMVTAQSRTDLNQNTGIVIQKCRIKATSDLEPVIKEFPSFLGRPWEEYARVVVMQTTITNVIDKKGWSTWNGDIKKPYFAEYDNNGAGANTSGRVPWSLVINEADAKTFTAERFIGGADWLPSTGFPYQLGLYN 583
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 25634983 25641483 - MELO3C021067.2.1 Cme01g01813 318789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g01813 583 PANTHER PECTINESTERASE 14 580 - -
Cme01g01813 583 ProSitePatterns Pectinesterase signature 2. 419 428 IPR033131 -
Cme01g01813 583 Gene3D Invertase/pectin methylesterase inhibitor family protein 34 199 IPR035513 -
Cme01g01813 583 SMART PMEI_2 34 193 IPR006501 GO:0004857
Cme01g01813 583 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 36 198 IPR035513 -
Cme01g01813 583 TIGRFAM PME_inhib: pectinesterase inhibitor domain 7 198 IPR006501 GO:0004857
Cme01g01813 583 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 3 14 580 - -
Cme01g01813 583 Gene3D - 269 581 IPR012334 -
Cme01g01813 583 CDD PMEI-like_3 41 199 - -
Cme01g01813 583 Pfam Plant invertase/pectin methylesterase inhibitor 37 193 IPR006501 GO:0004857
Cme01g01813 583 Pfam Pectinesterase 275 566 IPR000070 GO:0030599|GO:0042545
Cme01g01813 583 SUPERFAMILY Pectin lyase-like 270 580 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01813 Cme-Chr1:25634983 Cme04g01402 Cme-Chr4:19874958 0 dispersed
Cme01g01813 Cme-Chr1:25634983 Cme01g01815 Cme-Chr1:25665731 5.89E-63 proximal
Cme01g01812 Cme-Chr1:25634983 Cme01g01813 Cme-Chr1:25634983 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g01813 K01051 - csv:101221055 1018.45