Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g01842 ATGAACCATGTGAGAGATCAACAACAAGAAATTCCTCAATTACATTTTGGAAATTTGGAAGTGGTCACGGCTCTCGGCCGTGGAGCCAAAGGAGTCGTCTTCTTGGCTCGAAATCCCGCGGAGGACGACGCCGAATGGTTGGCCTTGAAGGTGATTTCGAGAGAGTTAATCGAGAGGAAGGCCAAGATTGTCAATAACGATGGAGCTGAGTATCGGAGAGTTTGCTTTGAACGAGAAGTTTTGCGGCTTTTCCGGCATCCGCTTTTGCCTCGATTGCGAGGAGTTTTGGATACTCAGAAAGTTGTAGGCTACGCCATTGATTATTGTAATGGACGAGATCTTAATGCTCTTAGGAAGAAACAGACGGAAAAAATGTTCTCCGACGACGTTATTAGATTTTACGCCGCGGAACTAGTCATGGCGTTGGAGTATGTACACAGTTTAGGAATAGTTTATAGAGATTTGAAGCCGGAGAATGTCATGGTTCAACATAACGGCCATATAATGCTTGTGGATTTTGATCTCTCTACAAGACTCTCTCAAAAATCTCCCAAGTCGTCTCCGTCGCCGGCGTCGGAGGTTTTGGCGGAATCTAAATTTGTGAAAGAAGATAAGAACAGCAAGAAGATCAGGAAGAAGAAGCGATTCTTTCATTTTCACCGGTTCTGCAACTCCGGCGTATCACCGGAAGAATCCGATCAACAGGCTACGGCGAAGGAGGAACCAAGATCGGTGCGGGAGTCGGAGTCGGAGTCGGAGTCGTCAGAGAAGTCGAACTCTTTCGTGGGGACAGAGGACTACGTGGCACCGGAGATCGTAGCCGGGAAGGGACATGACTTCGCCGTGGACTGGTGGTCACTGGGGGTAGTTTTATACGAGATGCTGTACGGAACGACGCCGTTTAGGGGAACGAATAGAAAGGAAACGTTTTACCGGATTCTGACGAAATCGCCGGATCTGTGCGGGGAAGCGACGGCGTTGAGGGATTTGATAAGGAAGTTGCTGGAGAAAGATCCGAGGAAGAGGATGGAGGTGGAGGAAATCAAAAGGCATGATTTCTTCAAAGGAATTGAGTGGGATATGGTTCTTGAAATTCCGCGGCCGCCGTCGCTGCCGGAAACGGGGGAAGAGGAGAGAAATGGAGATAAGATAATTGATGTGGAATCTTTCGTGGAACACTTATTTTGCAGCGAAATAGAGAAGAAGAATCAAATTAAGGGAGGTGAAGTAAAAGGGTTGATTCCTAACAATACAGAGTCTGACATATTTCATGTATTCTAA 1281 47.07 MNHVRDQQQEIPQLHFGNLEVVTALGRGAKGVVFLARNPAEDDAEWLALKVISRELIERKAKIVNNDGAEYRRVCFEREVLRLFRHPLLPRLRGVLDTQKVVGYAIDYCNGRDLNALRKKQTEKMFSDDVIRFYAAELVMALEYVHSLGIVYRDLKPENVMVQHNGHIMLVDFDLSTRLSQKSPKSSPSPASEVLAESKFVKEDKNSKKIRKKKRFFHFHRFCNSGVSPEESDQQATAKEEPRSVRESESESESSEKSNSFVGTEDYVAPEIVAGKGHDFAVDWWSLGVVLYEMLYGTTPFRGTNRKETFYRILTKSPDLCGEATALRDLIRKLLEKDPRKRMEVEEIKRHDFFKGIEWDMVLEIPRPPSLPETGEEERNGDKIIDVESFVEHLFCSEIEKKNQIKGGEVKGLIPNNTESDIFHVF 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 26077450 26079230 - MELO3C021090.2.1 Cme01g01842 318818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g01842 426 Pfam Protein kinase domain 20 187 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme01g01842 426 Pfam Protein kinase domain 253 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme01g01842 426 ProSitePatterns Serine/Threonine protein kinases active-site signature. 150 162 IPR008271 GO:0004672|GO:0006468
Cme01g01842 426 MobiDBLite consensus disorder prediction 226 261 - -
Cme01g01842 426 PANTHER RHO-ASSOCIATED PROTEIN KINASE 1/2-RELATED 6 399 - -
Cme01g01842 426 SUPERFAMILY Protein kinase-like (PK-like) 8 373 IPR011009 -
Cme01g01842 426 Gene3D Transferase(Phosphotransferase) domain 1 113 185 - -
Cme01g01842 426 ProSiteProfiles Protein kinase domain profile. 19 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme01g01842 426 MobiDBLite consensus disorder prediction 234 254 - -
Cme01g01842 426 Gene3D Transferase(Phosphotransferase) domain 1 253 373 - -
Cme01g01842 426 SMART serkin_6 19 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme01g01842 426 Gene3D Phosphorylase Kinase; domain 1 19 112 - -
Cme01g01842 426 PANTHER FLIPPASE KINASE 1-RELATED 6 399 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01842 Cme-Chr1:26077450 Cme05g00141 Cme-Chr5:958801 2.86E-98 dispersed
Cme01g01842 Cme-Chr1:26077450 Cme11g01897 Cme-Chr11:27108962 2.03E-71 transposed
Cme01g01842 Cme-Chr1:26077450 Cme08g01220 Cme-Chr8:8594012 2.65E-71 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64624 PF00069 Pkinase 8.60E-30 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g01842 K20714 - csv:101223223 730.709