Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g01858 ATGTCTCGAACACCAAATTATGAGTTCCAAGAATGGTGGAACAAACAAAGAGAAAGGAACCATGATGAACACTTACTGGAAAAGTCTGACTATTTATCGACCTCACCTGCATTTCTCTCTGTTGAGATCCGGAGTTCTGGAAGTCCTGGAGATCGGATGGTTGATAAGGACCGGGCGAGGACGAGGAGTGCCCGTCAGATTTCTTGGGTTTGGTTGTTGAAATTCCAGCAGATCGCTGGTTCATTGGCTTCAATCACCAATGGGGTCGTTTATCTAATCCGCACTGCTAATCGTCGGATCTCATCGCCCGATTCTCCAGCTGATTCGGCATCGTCTCGGCTTTACAGGATTATCAAAGTGTTTTTGATTGTAGTGCTTCTATTGCTTGTTTTTGAGCTCGTGGCATACTTCAATGGCTGGCATTTCAGCCCCCCTTCTGTGAGTACCGCTTCTGCGGAGGTGCTTGGAATGATAGGGTTTCTCTATGCTAATTGGCTTCAGATTCGAGCAAATTACCTGGCTCCACCGTTGCAGTACTTGACCAATCTCTGCATTGTGTTGTTCCTGATCCAGTCAGTGGACCGTTTGCTTTTAATGTTCGGGTGTTTTTGGATCAAGTTCAGGCGATTGAAGCCCATAGCGGCATTTGAGTATTCTTCCTCGGACGAAAATGCTGCTAGTCCTGAGGATTATCCAATGGTATTGGTGCAGATTCCCATGTGCAATGAGAGGGAGAGTGTGCCACGTTCATCTTTCTTTCAGGTTTATCAACAATCTATCGCAGCTGTATGTATCCAAGACTGGCCAAAGGATAAAATGCTTGTACAGGTTTTAGATGATTCTGATGAGCTAGATGTTCAACAACTTATCAAGGCTGAAGTACAAAAATGGCAACAGAGAGGTGTCCGTATATTGTATAGACACCGTCTCATACGTACAGGCTACAAGGCAGGGAATCTCAAATCTGCAATGGGGTGTGATTATGTAAAAGACTATGAGTTTGTGGCAATCTTTGATGCAGATTTTCAGCCAGGACCAGACTTTTTAAAGAAAACTATTCCACATTTTAAGGGGAATGATGAACTTGCATTGGTCCAAACAAGGTGGTCATTTGTGAACAAGGACGAAAACTTGCTCACAAGATTGCAGAACATTAATTTGTCCTTCCATTTTGAGGTTGAGCAGCAAGTAAATGGCATGTTTATCAACTTTTTTGGTTTCAATGGAACTGCTGGAGTCTGGAGAATCAAAGCTTTGGAAGAATGTGGGGGCTGGTTGGAAAGAACCACTGTCGAGGACATGGATGTTGCAGTTCGCGCCCATCTTTGTGGCTGGAAGTTTATATATCTAAATGATGTGAAGTGCCTTTGTGAACTTCCAGAATCATATGAAGCGTACAAGAAACAACAACACCGCTGGCATTCAGGCCCTATGCAGTTATTTCGTTTGTGCTTCTCTGACATACTCAAATCAAAGGTGAGTTGGAAGAAGAAAGCTAATTTGATTTTTCTTTTCTTCCTCTTGCGAAAGCTTGTCCTTCCCTTCTATTCCTTTACCTTGTTCTGCATAATTCTCCCCCTCACCATGTTCCTTCCAGAAGCTCATCTACCAGCTTGGGTTGTTTGCTATGTTCCCGGAATCATGTCCATCCTAAATATTCTTCCCGCACCACGATCGTTCCCATTTCTAGTCCCCTATCTTCTATTTGAAAACACCATGTCTGTTACCAAATTCAATGCCATGATATCAGGGTTATTCCGATTTGGAAGTTCATACGAATGGATCGTAACGAAAAAACTAGGAAGATCATCTGAAAACAATCTTGTTGCTTTCGAAAAAGAACTAGAACCTCTAGTTGAGGGTACAAGTCTTCATCGATCTTCATCAGAATCCGGCCTTCAGGAACTGACCAAGCTCGAGATATCGAAAAAAGCAGGGAAACACAAAAGAAATCGTCTGTATAGGAAGGAATTGGCTCTTGCATTCATTTTGTTAACCGCCTCAGCAAGAAGTCTCTTATCTGCTCAAGGAATTCACTTCTACTTCCTATTATTTCAAGGTATCACTTTTCTAGTTGTTGGACTCGATTTAATCGGAGAGCAGGTCAGTTAA 2112 42.8 MSRTPNYEFQEWWNKQRERNHDEHLLEKSDYLSTSPAFLSVEIRSSGSPGDRMVDKDRARTRSARQISWVWLLKFQQIAGSLASITNGVVYLIRTANRRISSPDSPADSASSRLYRIIKVFLIVVLLLLVFELVAYFNGWHFSPPSVSTASAEVLGMIGFLYANWLQIRANYLAPPLQYLTNLCIVLFLIQSVDRLLLMFGCFWIKFRRLKPIAAFEYSSSDENAASPEDYPMVLVQIPMCNERESVPRSSFFQVYQQSIAAVCIQDWPKDKMLVQVLDDSDELDVQQLIKAEVQKWQQRGVRILYRHRLIRTGYKAGNLKSAMGCDYVKDYEFVAIFDADFQPGPDFLKKTIPHFKGNDELALVQTRWSFVNKDENLLTRLQNINLSFHFEVEQQVNGMFINFFGFNGTAGVWRIKALEECGGWLERTTVEDMDVAVRAHLCGWKFIYLNDVKCLCELPESYEAYKKQQHRWHSGPMQLFRLCFSDILKSKVSWKKKANLIFLFFLLRKLVLPFYSFTLFCIILPLTMFLPEAHLPAWVVCYVPGIMSILNILPAPRSFPFLVPYLLFENTMSVTKFNAMISGLFRFGSSYEWIVTKKLGRSSENNLVAFEKELEPLVEGTSLHRSSSESGLQELTKLEISKKAGKHKRNRLYRKELALAFILLTASARSLLSAQGIHFYFLLFQGITFLVVGLDLIGEQVS 703
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 26514541 26521734 + MELO3C021106.2.1 Cme01g01858 318834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g01858 703 PANTHER - 25 702 - -
Cme01g01858 703 PANTHER XYLOGLUCAN GLYCOSYLTRANSFERASE 6-RELATED 25 702 - -
Cme01g01858 703 SUPERFAMILY Nucleotide-diphospho-sugar transferases 231 519 IPR029044 -
Cme01g01858 703 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 222 459 IPR029044 -
Cme01g01858 703 Pfam Glycosyl transferase family group 2 335 540 IPR001173 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01858 Cme-Chr1:26514541 Cme04g00326 Cme-Chr4:2611900 0 dispersed
Cme01g01858 Cme-Chr1:26514541 Cme03g02127 Cme-Chr3:28494790 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g01858 - - csv:101216681 1347.8