Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g01859 ATGGATGAAGATTTTGATATCCCTGCCGCCCCTGACATGGCCGACGACTTGGATCTTCCCGATGAAACCGTTGCTCTCAAGGTCGGTGAGGAGAAAGAGATTGGAAGTCAAGGCTTGAAAAAGAAGCTTCTTAAGGAAGGTGAAGGATGGGTTACTCCGGAAAATGGCGATGAGGTTGAAGTTCACTATACTGGGACTTTGCTTGATGGTACTCAGTTTGATTCTAGCCGCGATCGTGGAACCCCGTTCAAGTTCACTCTTGGTCAAGGACAAGTGATCAAAGGATGGGATTTGGGTATCAAAACAATGAAGAAAAATGAAAAAGCTCTTTTTACCATTCCTCCTGATCTGGCATATGGTGAATCTGGCTCCCCGCCAACCATTCCTCCTAGTGCGACATTGCAGTTCGATGTTGAGTTACTATCTTGGACAAGCGTTAAGGACATATGTAAGGACGGAGGAATATTCAAGAAGATTCTAACTGAAGGGGACAAGTGGGATAATCCAAAGGACCTTGATGAAGTGCTAGTTAATTTTGAAGCTAAGCTAGAAGATGGAACACTTGTTGCAAAAGCTGATGGAGTGGAATTCACTGTTGCGGATGGTTACTTTTGCCCTGCACTTGCGAAGGCTGTCAAAACCATGAAGTTAGGTGAAAAGGCACTCCTCACGGTGAAGCCACAATATGGGTTTGGGGAGAAAGGTAAATCTGCCTGTGGCAATGAAGGTGCAGTTCCACCAAATGCATCTCTCGATATTACTTTAGAGTTGGTATCTTGGAAGACTGTTTCAGAAGTTACCCCTGACAAGAAGGTCATCAAGAAAATTCTGAAAGAAGGAGAAGGTTATGAGAAGCCAAATGATGGAGCTATTGTCAAAGTGAAATTGATTGGGAAGTTGGGAGATGGCAAGATATTCTTGAGGAAGGGACACGATGATGGTGAAGAGCCGTTTGAGTTCAAAACAGATGAAGAACAAGTGATTGATGGCCTCGACAAAGCTGTGGTGACTATGAAGAAAGGTGAGATAGCCCTGCTGACAATAGCACCAGAGTATGCTTTTGGTTCGTCTGAGTCACAACAGGATTTAGCTGTAGTTCCTCCAAACTCAACTGTGTATTACGAGGTTGAGCTGGTGGCTTTTGATAAGGAGAAAGAGTCATGGGAAATGAATAACCAGGAAAAGATTGAAGCTGCTGGTAAAAAGAAGGAAGAAGGAAACGTGTTGTTTAAGTCTGGAAAATTTGCTAGAGCTTCCAAGAGATATGAAAAGGCTGTGAAGTTCATTGAATACGATTCTTCATTTAGCGAAGAAGAGAAAAAACAGGCGAAGGCATTGAAAGTTGCATGCAATTTGAACAATGCAGCATGTAAATTGAAGCTAAAGTTGTACAACGAGGCAGAGAAATTGTGCACCAAGGTGCTGGAACTTGAGAGTTCGAACGTTAAGGCTCTCTACAGAAGGGCTCAAGCATATATCCAACTAGCTGATTTGGACTTGGCTGAATTTGACATAAAGAAGGCTCTTGATATAGATCCAAATAACAGGGATGTGAAATTGGAATACAAAACTCTGAAGGAGAAGGTGAAGGAATACAATAAAAAGGATGCCAAGTTTTACGGTAACATGTTTGCCAAAATGAAGAAAGTAGAATCTGCTTAA 1662 42.42 MDEDFDIPAAPDMADDLDLPDETVALKVGEEKEIGSQGLKKKLLKEGEGWVTPENGDEVEVHYTGTLLDGTQFDSSRDRGTPFKFTLGQGQVIKGWDLGIKTMKKNEKALFTIPPDLAYGESGSPPTIPPSATLQFDVELLSWTSVKDICKDGGIFKKILTEGDKWDNPKDLDEVLVNFEAKLEDGTLVAKADGVEFTVADGYFCPALAKAVKTMKLGEKALLTVKPQYGFGEKGKSACGNEGAVPPNASLDITLELVSWKTVSEVTPDKKVIKKILKEGEGYEKPNDGAIVKVKLIGKLGDGKIFLRKGHDDGEEPFEFKTDEEQVIDGLDKAVVTMKKGEIALLTIAPEYAFGSSESQQDLAVVPPNSTVYYEVELVAFDKEKESWEMNNQEKIEAAGKKKEEGNVLFKSGKFARASKRYEKAVKFIEYDSSFSEEEKKQAKALKVACNLNNAACKLKLKLYNEAEKLCTKVLELESSNVKALYRRAQAYIQLADLDLAEFDIKKALDIDPNNRDVKLEYKTLKEKVKEYNKKDAKFYGNMFAKMKKVESA 553
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 26522536 26527181 - MELO3C021107.2.1 Cme01g01859 318835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g01859 553 Pfam Tetratricopeptide repeat 482 515 IPR001440 GO:0005515
Cme01g01859 553 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 289 382 IPR001179 GO:0003755
Cme01g01859 553 SUPERFAMILY TPR-like 387 547 IPR011990 GO:0005515
Cme01g01859 553 ProSiteProfiles TPR repeat profile. 482 515 IPR019734 GO:0005515
Cme01g01859 553 SUPERFAMILY FKBP-like 33 148 - -
Cme01g01859 553 Gene3D Tetratricopeptide repeat domain 385 542 IPR011990 GO:0005515
Cme01g01859 553 PANTHER PEPTIDYLPROLYL ISOMERASE 272 380 - -
Cme01g01859 553 PANTHER PEPTIDYLPROLYL ISOMERASE 381 552 - -
Cme01g01859 553 PANTHER PEPTIDYLPROLYL ISOMERASE 1 267 - -
Cme01g01859 553 SMART tpr_5 399 432 IPR019734 GO:0005515
Cme01g01859 553 SMART tpr_5 482 515 IPR019734 GO:0005515
Cme01g01859 553 SMART tpr_5 448 481 IPR019734 GO:0005515
Cme01g01859 553 SUPERFAMILY FKBP-like 148 264 - -
Cme01g01859 553 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 381 552 - -
Cme01g01859 553 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 272 380 - -
Cme01g01859 553 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 1 267 - -
Cme01g01859 553 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 283 379 IPR001179 GO:0003755
Cme01g01859 553 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 169 257 IPR001179 GO:0003755
Cme01g01859 553 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 51 141 IPR001179 GO:0003755
Cme01g01859 553 Gene3D - 262 383 IPR046357 GO:0003755
Cme01g01859 553 Gene3D - 148 261 IPR046357 GO:0003755
Cme01g01859 553 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 56 144 IPR001179 GO:0003755
Cme01g01859 553 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 172 261 IPR001179 GO:0003755
Cme01g01859 553 SUPERFAMILY FKBP-like 264 399 - -
Cme01g01859 553 Coils Coil 515 535 - -
Cme01g01859 553 Gene3D - 28 147 IPR046357 GO:0003755
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01859 Cme-Chr1:26522536 Cme06g00864 Cme-Chr6:5912154 0 dispersed
Cme01g01859 Cme-Chr1:26522536 Cme01g01860 Cme-Chr1:26529915 6.87E-27 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g01859 K09571 - csv:101214513 1026.54