Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g01906 ATGTCCGATCTGAACTCCGCCGTCCACGGCGACTCCTCTCGCTACGCCGATCAATTTCTCGGTTCAGAGCTCCAACTTCAAAATTTCTCACAAACCCATCTTGGCGATCCTAATATATCCCCGGAAACTCACCAGCAAAATCTCAATTCGGCCGATTCAAACACTCCCACCAGCGGCGGTTCATCCACGCGCCGCCCTCGTGGCCGCCCCGCCGGCTCCAAGAACAAGCCAAAACCGCCGGTGATCGTAACACGTGACAGCCCCTACGCTATGAGGTCGCTCGTGCTAGAGGTCCCTGCAGGCTATGATGTGGTGGAATCCATCTCGAGTTACGCCACCCGCCGCCGCCACGGCGTTTGCATTCTCGGCGGCACTGGCGCCGTCACGAACGTCAAGTTGCGTCAGCCGGCGGCTCCTTCGGGTACTGCTATGAGTTTTCGTGGAACGTTTGAGATTGTGTCTCTGACTGGTACGGCGTTGCCGTCATCGGGTGCCGGAGGTCTAACGATTTATTTGACCGGCGGGCCAGGGCAACGGGAAGGGCAGGTCATCGGAGGAAGCGTCCTCGGGCCATTGACAGCATCGAGTCCAGTTATATTGATGGTGGCATCGTTTACGAATGCGGTGTCTGATCGGCTACCGCCGGACGAGGCAGAGCCGCCGGTGCAAGTTCACCCATCGACGTCGTCATCTTCAGGTGGTGGCGGCCAGCTTGGAGACATCGGAAGCTTCAACTTTCGTGACAATGGTTACAGGTGGAACAACAATACATCAAGACCTCCGACGACATTGTGA 795 57.36 MSDLNSAVHGDSSRYADQFLGSELQLQNFSQTHLGDPNISPETHQQNLNSADSNTPTSGGSSTRRPRGRPAGSKNKPKPPVIVTRDSPYAMRSLVLEVPAGYDVVESISSYATRRRHGVCILGGTGAVTNVKLRQPAAPSGTAMSFRGTFEIVSLTGTALPSSGAGGLTIYLTGGPGQREGQVIGGSVLGPLTASSPVILMVASFTNAVSDRLPPDEAEPPVQVHPSTSSSSGGGGQLGDIGSFNFRDNGYRWNNNTSRPPTTL 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 27461013 27462711 - MELO3C015690.2.1 Cme01g01906 318882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g01906 264 MobiDBLite consensus disorder prediction 223 238 - -
Cme01g01906 264 MobiDBLite consensus disorder prediction 32 64 - -
Cme01g01906 264 MobiDBLite consensus disorder prediction 32 85 - -
Cme01g01906 264 MobiDBLite consensus disorder prediction 211 264 - -
Cme01g01906 264 Gene3D - 91 224 - -
Cme01g01906 264 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 25 10 243 - -
Cme01g01906 264 CDD DUF296 92 205 IPR005175 -
Cme01g01906 264 MobiDBLite consensus disorder prediction 248 264 - -
Cme01g01906 264 SUPERFAMILY AF0104/ALDC/Ptd012-like 90 223 - -
Cme01g01906 264 Pfam Plants and Prokaryotes Conserved (PCC) domain 92 207 IPR005175 -
Cme01g01906 264 ProSiteProfiles PPC domain profile profile. 88 226 IPR005175 -
Cme01g01906 264 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 10 243 IPR014476 GO:0003680
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01906 Cme-Chr1:27461013 Cme02g01693 Cme-Chr2:24024980 2.10E-47 dispersed
Cme01g01906 Cme-Chr1:27461013 Cme11g02522 Cme-Chr11:31705602 4.74E-48 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g01906 - - cmo:103492556 511.916