Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme01g01928 ATGAAAGAGGTTGAAGGAAGAAGGGTTTGTCAGGAGTTTTCAGCTGGGTATTATGGTCTTTGTGCTGTTGGAGGAATGCTCAGTGCTGGGACTACTCATCTTGCTATTACACCTCTTGATGTCTTGAAGGTTAATATGCAGGTTAATCCAATCAAGTACAGTGGCATTTCTTCTGGTTTTTCTATTCTTTGGAGGGAACAAGGTCCTTCATCACTTTGGAGAGGTTGGTCGGGAAAGTTATTTGGGTATGGAGTTCAAGGCGGCTTCAAATTTGGTCTCTATGAGTACTTTAAGAAGTTCTATTCCGATTTGCTGGAAGGCCATAGTAGAAGTTCCATATACTTTCTCAGCAGTGCTTCTGCTCAAGTTTTTGCTGACGTTGCTCTCTGTCCTTTTGAAGCTGTCAAGGTCAGAGTCCAGGCACAACCCTATTATGCCAAGGGGTTGGCTGATGGGTTTCCAAAGTTATACTACAGTGAAGGTCTTTCGGGTTTCTACAGAGGCCTTTTTCCACTCTGGGGAAGGAATCTTCCATTCTCCATGATAATGTTCTCAACATTTGAGCATTCAGTGAACTTCATATATCAGAATATCATTCAGCGCAGAAAGGAAGATTGCTCGAGAACCCAACAGCTTGGTGTTACATGTTTAGCTGGCTATACAGCTGGAGCTTTCGGTACTTTTGTCTCAAATCCAGCTGATAACATTGTTTCCTCTCTTTATAATAAGAAGGCTGATAATGTGCTGCAGGCAGTGAAGAAGATAGGATTTGGAAATCTATTTATTAGAAGCCTTCCTGTCAGAATTACAATTGTTGGTCCTCTTGTTACTTTGCAGTGGTTCTTCTATGACACCATTAAAGTGCTAAGTGGACTGCCTACAAGTGGAGGGATCAACAACAGGAAATTGGAAGAAGCAAAACTATCAACTTAG 933 41.8 MKEVEGRRVCQEFSAGYYGLCAVGGMLSAGTTHLAITPLDVLKVNMQVNPIKYSGISSGFSILWREQGPSSLWRGWSGKLFGYGVQGGFKFGLYEYFKKFYSDLLEGHSRSSIYFLSSASAQVFADVALCPFEAVKVRVQAQPYYAKGLADGFPKLYYSEGLSGFYRGLFPLWGRNLPFSMIMFSTFEHSVNFIYQNIIQRRKEDCSRTQQLGVTCLAGYTAGAFGTFVSNPADNIVSSLYNKKADNVLQAVKKIGFGNLFIRSLPVRITIVGPLVTLQWFFYDTIKVLSGLPTSGGINNRKLEEAKLST 310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 27628138 27634205 - MELO3C028882.2.1 Cme01g01928 318904
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme01g01928 310 ProSiteProfiles Solute carrier (Solcar) repeat profile. 109 193 IPR018108 -
Cme01g01928 310 Pfam Mitochondrial carrier protein 114 196 IPR018108 -
Cme01g01928 310 Pfam Mitochondrial carrier protein 23 102 IPR018108 -
Cme01g01928 310 ProSiteProfiles Solute carrier (Solcar) repeat profile. 16 100 IPR018108 -
Cme01g01928 310 Gene3D Mitochondrial carrier domain 21 289 IPR023395 -
Cme01g01928 310 ProSiteProfiles Solute carrier (Solcar) repeat profile. 210 289 IPR018108 -
Cme01g01928 310 PANTHER MITOCHONDRIAL PHOSPHATE CARRIER PROTEIN 1, MITOCHONDRIAL 5 304 - -
Cme01g01928 310 SUPERFAMILY Mitochondrial carrier 20 285 IPR023395 -
Cme01g01928 310 PANTHER SOLUTE CARRIER FAMILY 25 (MITOCHONDRIAL CARRIER PHOSPHATE CARRIER), MEMBER 3, LIKE-RELATED-RELATED 5 304 IPR044677 GO:0005315|GO:1990547
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01928 Cme-Chr1:27628138 Cme06g01908 Cme-Chr6:22670156 3.98E-108 dispersed
Cme01g01928 Cme-Chr1:27628138 Cme10g00935 Cme-Chr10:6996882 1.04E-13 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme01g01928 K15102 - csv:101219895 620.928